View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_43 (Length: 252)
Name: NF1529_high_43
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 41723087 - 41722878
Alignment:
| Q |
1 |
ttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaa |
100 |
Q |
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| T |
41723087 |
ttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaa |
41722988 |
T |
|
| Q |
101 |
atctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacaca |
200 |
Q |
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| T |
41722987 |
atctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacaca |
41722888 |
T |
|
| Q |
201 |
tgttcacaat |
210 |
Q |
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|||||||||| |
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| T |
41722887 |
tgttcacaat |
41722878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 41718361 - 41718149
Alignment:
| Q |
1 |
ttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaa |
100 |
Q |
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| T |
41718361 |
ttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaa |
41718262 |
T |
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| Q |
101 |
atctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacaca |
200 |
Q |
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| T |
41718261 |
atctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacaca |
41718162 |
T |
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| Q |
201 |
tgttcacaattgg |
213 |
Q |
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|||||||| |||| |
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| T |
41718161 |
tgttcacacttgg |
41718149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
| Q |
65 |
gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa |
158 |
Q |
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||||||||||||||||||| ||| | ||||| ||||| | |||| ||||| ||||| ||||||| |||||||| | ||||||||||||||||| |
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| T |
48781360 |
gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa |
48781266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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