View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_46 (Length: 246)
Name: NF1529_high_46
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 3237395 - 3237173
Alignment:
| Q |
7 |
tagattattctacctgagccgtggaagcaggaaattcaggatcattttcgagtgacttttttggttctgatgattcagtctcctttttagtagaatctga |
106 |
Q |
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| T |
3237395 |
tagattgttctacctgagccgtggaagcaggaaattcaggatcattttcgagtgacttttttggttctgatgattcagactcctttttagtagaatctga |
3237296 |
T |
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| Q |
107 |
atcttttgacagaacaaatgaaggaataggttcgctcgctggacctaaacttgcaggagtcttgattttctctgctgacagttcctctatttttactggt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3237295 |
atcttttgacagaacaaatgaaggaataggttcgctcgctggacctaaacttgcaggagtcttgattttctctgctgacagttcctctatttttactggt |
3237196 |
T |
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| Q |
207 |
ttaatcattttatccataggaac |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
3237195 |
ttaatcattttatccataggaac |
3237173 |
T |
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