View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_58 (Length: 214)
Name: NF1529_high_58
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 24831432 - 24831228
Alignment:
| Q |
1 |
atgaaggcctgatcaactaccacttccaaatgagaggatcggagtaactaatggtggtaatcttcaacattttaacagattgagtgaaacagaaaggaat |
100 |
Q |
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| T |
24831432 |
atgaaggcctgatcaactaccacttccaaatgagaggatcggagtaactaacggtggtaatcttcaacattttaacagattgagtgaaacagaaaggaat |
24831333 |
T |
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| Q |
101 |
aatttgcaacctatcttggcattggtggtacaattgcttgcttgcttctatggaactttatgttcatatcataaaagtgtagccacttattattttcttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
24831332 |
aatttgcaacctatcttggcattggtggtacaattgcttgcttgcttctatggaactttatgttcatatcataaaagcgtagccacttattattttgttg |
24831233 |
T |
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| Q |
201 |
gacat |
205 |
Q |
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||||| |
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| T |
24831232 |
gacat |
24831228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 16947478 - 16947411
Alignment:
| Q |
138 |
ttgcttgcttctatggaactttatgttcatatcataaaagtgtagccacttattattttcttcgacat |
205 |
Q |
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|||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| || ||||| |
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| T |
16947478 |
ttgcttgcttctatagaactttatgttcatatcatgcaagcatagccacttattattttgttggacat |
16947411 |
T |
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