View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_59 (Length: 214)
Name: NF1529_high_59
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 42010540 - 42010365
Alignment:
| Q |
24 |
aggaagtcctctctcaacctgcaagnnnnnnnncctaggaaaaaagctactaatactaggcaatagaattttcttccctttttccaacttcctcgcctcc |
123 |
Q |
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| T |
42010540 |
aggaagtcctctctcaacctgcaagctttttttcctaggaaaaaagctactaatactaggcaatagaattttcttccctttttccaacttcctcgcctcc |
42010441 |
T |
|
| Q |
124 |
atgttttgtggaagtgaatgctgcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42010440 |
atgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatg |
42010365 |
T |
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Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 1245878 - 1245710
Alignment:
| Q |
24 |
aggaagtcctctctcaacctgcaagnnnnnnnncctaggaaaaaagctactaatactaggcaatagaattttcttccctttttccaacttcctcgcctcc |
123 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
1245878 |
aggaagtcctctctcaacctgcaagctttttttcctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctcc |
1245779 |
T |
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| Q |
124 |
atgttttgtggaagtgaatgctgcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgat |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1245778 |
atgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgat |
1245710 |
T |
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