View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_6 (Length: 484)
Name: NF1529_high_6
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Original strand, 4995938 - 4996389
Alignment:
| Q |
16 |
ccttctacatgtgtacttctggattaaaacaatactttgtcattctctaaaagtagtatacttcaaaaatcatgcgtgatgttttaaaaacgtggttcga |
115 |
Q |
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| T |
4995938 |
ccttctacatgtgtacttctggattaaaacaatactttgtcattctctaaaagtagtatacttcaaaaatcatgcgcgatgttttaaaaacgtggttcga |
4996037 |
T |
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| Q |
116 |
caaaatattgttcttcaccaaacttggtaaaagaccattcttgtcccccaacatggatcttaaataatccatactaacatcttctaaggttgaggtctgc |
215 |
Q |
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| T |
4996038 |
caaaatattgttcttcaccaaacttggtaaaagaccattcttgtcccccaacatggatcttaaataatccatactaacatcttctaaggttgaggtctgc |
4996137 |
T |
|
| Q |
216 |
acgtttctatgttagtcgttgagattttgttttatcaagattttgataagggaacaagagtttgtttgaacggcacttataatataacttgtgatattgg |
315 |
Q |
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| T |
4996138 |
acgtttctatgttagtcgttgagattttgttttatcaagattttgataagggaacaagagtttgtttgaacggcacttataatataacttgtgatattgg |
4996237 |
T |
|
| Q |
316 |
tttctcaattattacccttattannnnnnngagagatttggattctcaattttatttactcaataatccaacttgagataataaaatgaacaaaactttc |
415 |
Q |
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| T |
4996238 |
tttctcaattattacccttattatttttttgagagatttggattctcaattttatttactcaataatccaacttgagataataaaatgaacaaaactttc |
4996337 |
T |
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| Q |
416 |
tagaacacgaattcttttaaccagttaaaaaaggcttaaatatgatattagt |
467 |
Q |
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| T |
4996338 |
tagaacacgaattcttttaaccagttaaaaaaggcttaaatatgatattagt |
4996389 |
T |
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