View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1529_high_60 (Length: 214)

Name: NF1529_high_60
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1529_high_60
NF1529_high_60
[»] chr7 (19 HSPs)
chr7 (20-196)||(17111785-17111961)
chr7 (93-184)||(38123720-38123811)
chr7 (19-92)||(45557409-45557482)
chr7 (22-92)||(32295228-32295298)
chr7 (85-128)||(41386861-41386904)
chr7 (92-130)||(26984533-26984571)
chr7 (119-161)||(41386913-41386955)
chr7 (90-130)||(35105152-35105192)
chr7 (86-136)||(45821725-45821776)
chr7 (119-173)||(12306667-12306721)
chr7 (19-85)||(40491629-40491695)
chr7 (121-186)||(6996455-6996520)
chr7 (85-126)||(22195862-22195903)
chr7 (85-126)||(30182342-30182383)
chr7 (119-184)||(45004907-45004972)
chr7 (119-183)||(7087390-7087454)
chr7 (90-126)||(24109457-24109493)
chr7 (85-125)||(28725098-28725138)
chr7 (109-161)||(48159006-48159058)
[»] chr2 (23 HSPs)
chr2 (24-162)||(43501087-43501235)
chr2 (91-183)||(7632640-7632732)
chr2 (24-92)||(33019129-33019197)
chr2 (85-126)||(42740975-42741016)
chr2 (21-85)||(16518829-16518893)
chr2 (24-85)||(13912838-13912899)
chr2 (90-131)||(21234576-21234617)
chr2 (19-77)||(680258-680316)
chr2 (83-121)||(5533075-5533113)
chr2 (119-161)||(7630361-7630403)
chr2 (92-161)||(9943368-9943438)
chr2 (24-82)||(22536052-22536110)
chr2 (54-92)||(31415379-31415417)
chr2 (72-129)||(43073970-43074028)
chr2 (93-131)||(43717317-43717355)
chr2 (87-128)||(16518775-16518816)
chr2 (119-184)||(33047650-33047715)
chr2 (85-129)||(6327115-6327159)
chr2 (85-129)||(12037056-12037100)
chr2 (86-126)||(30503207-30503247)
chr2 (24-92)||(32596035-32596103)
chr2 (22-92)||(33502281-33502348)
chr2 (90-130)||(42650265-42650305)
[»] chr8 (25 HSPs)
chr8 (87-196)||(15677864-15677973)
chr8 (89-162)||(32994292-32994365)
chr8 (85-170)||(18355894-18355979)
chr8 (19-124)||(32927892-32928009)
chr8 (87-159)||(38335909-38335981)
chr8 (23-124)||(35494990-35495103)
chr8 (22-81)||(38257627-38257686)
chr8 (19-129)||(26100114-26100236)
chr8 (117-180)||(26668478-26668541)
chr8 (24-77)||(37684464-37684517)
chr8 (85-126)||(38868496-38868537)
chr8 (19-59)||(10368042-10368082)
chr8 (119-162)||(32927836-32927879)
chr8 (85-128)||(37684401-37684444)
chr8 (85-127)||(4662949-4662991)
chr8 (23-73)||(9461510-9461560)
chr8 (147-184)||(5218993-5219030)
chr8 (85-134)||(7244647-7244696)
chr8 (92-129)||(7644559-7644596)
chr8 (85-126)||(13384700-13384741)
chr8 (19-92)||(16972032-16972105)
chr8 (115-156)||(35525362-35525403)
chr8 (117-162)||(42455856-42455901)
chr8 (85-126)||(44141096-44141137)
chr8 (142-186)||(39648266-39648310)
[»] chr1 (19 HSPs)
chr1 (85-162)||(11049212-11049289)
chr1 (87-159)||(28287384-28287456)
chr1 (17-92)||(7524157-7524232)
chr1 (23-85)||(32370003-32370065)
chr1 (30-92)||(1514387-1514449)
chr1 (25-181)||(30557441-30557613)
chr1 (85-126)||(28083934-28083975)
chr1 (32-92)||(2555945-2556005)
chr1 (85-129)||(6021799-6021843)
chr1 (85-129)||(7790688-7790732)
chr1 (24-92)||(34721813-34721881)
chr1 (20-92)||(34915110-34915182)
chr1 (121-176)||(24587839-24587894)
chr1 (119-162)||(28083986-28084029)
chr1 (26-92)||(45660580-45660646)
chr1 (88-161)||(3134781-3134854)
chr1 (19-92)||(10324906-10324979)
chr1 (106-186)||(8381904-8381984)
chr1 (119-171)||(49824824-49824876)
[»] chr6 (24 HSPs)
chr6 (85-176)||(6895996-6896087)
chr6 (23-161)||(957595-957745)
chr6 (85-128)||(765432-765475)
chr6 (85-126)||(4910906-4910947)
chr6 (119-196)||(5724728-5724805)
chr6 (23-88)||(3289793-3289857)
chr6 (119-184)||(33136581-33136646)
chr6 (24-92)||(3482090-3482158)
chr6 (87-126)||(16540105-16540144)
chr6 (24-130)||(4907957-4908074)
chr6 (24-81)||(25195339-25195396)
chr6 (117-161)||(25195460-25195504)
chr6 (85-128)||(6654136-6654179)
chr6 (123-196)||(1485248-1485322)
chr6 (19-81)||(8856362-8856424)
chr6 (116-158)||(18690620-18690662)
chr6 (85-126)||(5724676-5724717)
chr6 (85-126)||(7952755-7952796)
chr6 (87-128)||(30927039-30927080)
chr6 (85-134)||(31725766-31725815)
chr6 (19-92)||(34620930-34621003)
chr6 (19-92)||(34748367-34748440)
chr6 (122-162)||(2002566-2002606)
chr6 (122-162)||(5681397-5681437)
[»] chr5 (14 HSPs)
chr5 (85-196)||(18637212-18637323)
chr5 (91-182)||(39097188-39097279)
chr5 (85-126)||(9818732-9818773)
chr5 (87-126)||(18851130-18851169)
chr5 (119-185)||(10898643-10898709)
chr5 (105-162)||(25548462-25548519)
chr5 (105-160)||(39229136-39229191)
chr5 (116-185)||(3043099-3043168)
chr5 (85-126)||(6951351-6951392)
chr5 (85-126)||(38845441-38845482)
chr5 (87-126)||(31906257-31906296)
chr5 (91-161)||(35563586-35563656)
chr5 (85-129)||(34250397-34250441)
chr5 (24-92)||(42858152-42858220)
[»] chr3 (22 HSPs)
chr3 (23-92)||(31013062-31013131)
chr3 (23-92)||(31708211-31708280)
chr3 (119-190)||(48410910-48410981)
chr3 (88-161)||(42375488-42375561)
chr3 (88-161)||(42404202-42404275)
chr3 (117-184)||(3845208-3845275)
chr3 (85-128)||(52364047-52364090)
chr3 (117-184)||(54596740-54596807)
chr3 (119-184)||(1441479-1441544)
chr3 (85-149)||(21367147-21367211)
chr3 (90-130)||(32111988-32112028)
chr3 (121-185)||(39256596-39256660)
chr3 (91-131)||(40339219-40339259)
chr3 (90-130)||(41115413-41115453)
chr3 (117-196)||(35264507-35264586)
chr3 (20-83)||(42484469-42484531)
chr3 (23-53)||(32523306-32523336)
chr3 (22-92)||(41596120-41596190)
chr3 (119-176)||(35058291-35058348)
chr3 (19-92)||(35253435-35253508)
chr3 (85-126)||(40736583-40736624)
chr3 (22-74)||(4401345-4401397)
[»] chr4 (32 HSPs)
chr4 (85-161)||(1616354-1616429)
chr4 (23-92)||(35065107-35065176)
chr4 (119-190)||(35064979-35065050)
chr4 (87-129)||(30357507-30357549)
chr4 (119-184)||(49138933-49138998)
chr4 (85-126)||(8604668-8604709)
chr4 (27-92)||(45694658-45694723)
chr4 (113-181)||(21691312-21691380)
chr4 (87-127)||(30357644-30357684)
chr4 (19-92)||(32818336-32818411)
chr4 (85-128)||(14596685-14596728)
chr4 (25-92)||(21691186-21691253)
chr4 (119-162)||(25318991-25319034)
chr4 (91-130)||(29779106-29779145)
chr4 (85-128)||(32818416-32818459)
chr4 (85-128)||(53713607-53713650)
chr4 (119-190)||(53913675-53913746)
chr4 (19-57)||(8604590-8604628)
chr4 (119-184)||(1099758-1099823)
chr4 (23-92)||(6464055-6464124)
chr4 (87-128)||(9134606-9134647)
chr4 (119-160)||(33560669-33560710)
chr4 (85-126)||(50061674-50061715)
chr4 (89-128)||(11271587-11271627)
chr4 (117-185)||(16551878-16551946)
chr4 (86-161)||(29728947-29729023)
chr4 (85-129)||(33456369-33456413)
chr4 (121-161)||(37353391-37353431)
chr4 (121-161)||(37365365-37365405)
chr4 (117-161)||(39211068-39211112)
chr4 (24-92)||(45011918-45011986)
chr4 (85-121)||(49138809-49138845)
[»] scaffold0168 (2 HSPs)
scaffold0168 (117-184)||(31748-31815)
scaffold0168 (87-126)||(31824-31863)
[»] scaffold0361 (1 HSPs)
scaffold0361 (19-92)||(14082-14155)
[»] scaffold0005 (1 HSPs)
scaffold0005 (85-128)||(220650-220693)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 17111961 - 17111785
Alignment:
Q  20 aggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaaaagctacaaatcatagcttcaagtaga 119  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17111961 aggtaaagtgatttgtgtttggatgcattcatgtaaaaatgagtagaattataaatttgtgtgtaagaatcaaaagctacaaatcatagcttcaagtaga 17111862  T
Q  120 atcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttgacccctatagaa 196  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17111861 atcaattctactcgaaagcaaccaaacatgtcagaatcaattcgacatctctagaattaattttgacccctctagaa 17111785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 38123720 - 38123811
Alignment:
Q  93 aagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    ||||||||| |  ||||||||||||||||||||||||||  | || || ||||||||| | ||||||||| ||||||||||||| |||||||    
T  38123720 aagctacaatttctagcttcaagtagaatcaattctactttataggaaccaaacatgttaaaatcaattctacatctctagaatcaattttg 38123811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 45557482 - 45557409
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||| ||  || |||||||||||||| ||||||    
T  45557482 aaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaa 45557409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 32295298 - 32295228
Alignment:
Q  22 gtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||||||||  || |||| |||||||| | ||| ||||||||||||||||||| ||||||||    
T  32295298 gtaaagtgatttgtgttttaatacatttatgtaaaagtgagttgaattataaatttgtgtgttagaatcaa 32295228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 41386861 - 41386904
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    ||||| |||||||||||||| |||||||||||||||||||||||    
T  41386861 agaattaaaagctacaaatcctagcttcaagtagaatcaattct 41386904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 26984533 - 26984571
Alignment:
Q  92 aaagctacaaatcatagcttcaagtagaatcaattctac 130  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  26984533 aaagctacaaatcttagcttcaagtagaatcaattctac 26984571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 41386913 - 41386955
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||||| ||||||||||||| ||||||||||||||||||||    
T  41386913 aatcaattatactcgaaagcaatcaaacatgtcagaatcaatt 41386955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 35105192 - 35105152
Alignment:
Q  90 caaaagctacaaatcatagcttcaagtagaatcaattctac 130  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  35105192 caaaaactacaaattatagcttcaagtagaatcaattctac 35105152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 45821725 - 45821776
Alignment:
Q  86 gaatcaaaagctacaaatcatagcttcaa-gtagaatcaattctactcgaaa 136  Q
    |||||||||||||||||||||||||||||  || ||||||||||||| ||||    
T  45821725 gaatcaaaagctacaaatcatagcttcaacctaaaatcaattctactggaaa 45821776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 12306721 - 12306667
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctag 173  Q
    ||||||||||||| || ||||| ||||||||||| ||||||||| ||| ||||||    
T  12306721 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattctacacctctag 12306667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 40491695 - 40491629
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaa 85  Q
    ||||||||||||||| | ||||||| ||||||||||||| | |||  || | |||||||||||||||    
T  40491695 aaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaa 40491629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 6996520 - 6996455
Alignment:
Q  121 tcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttgac 186  Q
    |||||| |||| || || || ||||||||||||||||||||  ||||| ||||||| |||||||||    
T  6996520 tcaattatacttgagagtaaccaaacatgtcagaatcaattttacatccctagaatcaattttgac 6996455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 22195903 - 22195862
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||    
T  22195903 agaatcaaaagttacaaatcatagcttaaagtaaaatcaatt 22195862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 30182342 - 30182383
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    ||||||||||||||||| |  |||||||||||||||||||||    
T  30182342 agaatcaaaagctacaatttttagcttcaagtagaatcaatt 30182383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 45004972 - 45004907
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    |||||||| |||| || || || ||||||||||| ||||||||| ||| ||||||||| |||||||    
T  45004972 aatcaattatactagagagtaaccaaacatgtcaaaatcaattctacacctctagaatcaattttg 45004907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 7087390 - 7087454
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaatttt 183  Q
    |||||||||||||||||| ||  ||||||||||| | | ||||| |||  |||||||||||||||    
T  7087390 aatcaattctactcgaaaacattcaaacatgtcaaagtgaattccacacttctagaattaatttt 7087454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 24109493 - 24109457
Alignment:
Q  90 caaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  24109493 caaaatctacaaatcatagcttcaagcagaatcaatt 24109457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 28725098 - 28725138
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaat 125  Q
    |||||||||||||||||||  |||||||||||| |||||||    
T  28725098 agaatcaaaagctacaaattctagcttcaagtataatcaat 28725138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 48159006 - 48159058
Alignment:
Q  109 cttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||| | |||||||||||||| |||||||| ||||||| | ||||||||||    
T  48159006 cttcaaatcgaatcaattctactggaaagcaaccaaacatctgagaatcaatt 48159058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 43501235 - 43501087
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgt--gta--------agaatcaaaagctacaaatcatagcttca 113  Q
    ||||||||||||||||| || ||||||||||||| | ||| ||||||||| |||||||  | |        | |||||||||||||||||| ||| ||||    
T  43501235 aaagtgatttgtgtttgtatacattcatgtaaaactgagttgaattataattttgtgttagaatcaattctaaaatcaaaagctacaaatcctagtttca 43501136  T
Q  114 agtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||    
T  43501135 agtagaatcaattctacttgaaagcaaccaaacatgtcagaatcaattc 43501087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 7632640 - 7632732
Alignment:
Q  91 aaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaatttt 183  Q
    |||||||||||||  ||||||||||||| |||| ||||||||||| |||| |||||||||  |||||||||||||| || |||||| ||||||    
T  7632640 aaaagctacaaattttagcttcaagtaggatcagttctactcgaaggcaatcaaacatgttggaatcaattcgacacctttagaatcaatttt 7632732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 33019129 - 33019197
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| | ||||||    
T  33019129 aaagtgatttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaa 33019197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 42741016 - 42740975
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  42741016 agaatcaaaagctacaaatcttagcttcaagtagaatcaatt 42740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 16518893 - 16518829
Alignment:
Q  21 ggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaa 85  Q
    |||||| |||||||||||||||| ||||||||||||| | ||| ||| |||||||||||| ||||    
T  16518893 ggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaa 16518829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 13912899 - 13912838
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaa 85  Q
    |||||||||||||||||||| || |||||||||||| ||| |||   |||||||||||||||    
T  13912899 aaagtgatttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaa 13912838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 21234576 - 21234617
Alignment:
Q  90 caaaagctacaaatcatagcttcaagtagaatcaattctact 131  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  21234576 caaaagctacaaattctagcttcaagtagaatcaattctact 21234617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 680258 - 680316
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaattt 77  Q
    ||||||||||| |||||||||| || ||||||||||||| | ||| ||||| |||||||    
T  680258 aaggtaaagtgttttgtgtttgcatacattcatgtaaaagtgagttgaattctaaattt 680316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 5533075 - 5533113
Alignment:
Q  83 taagaatcaaaagctacaaatcatagcttcaagtagaat 121  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  5533075 taagaatcaaaagctacaaatagtagcttcaagtagaat 5533113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 7630403 - 7630361
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||    
T  7630403 aatcaattctacttgaaagcaaccaaacatgtcaaaatcaatt 7630361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 9943438 - 9943368
Alignment:
Q  92 aaagctacaaatcatagcttcaag-tagaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    ||||||||||||| |||||||||| ||||||||||||||   || ||||| ||||||||| | ||||||||    
T  9943438 aaagctacaaatcctagcttcaagctagaatcaattctaagtgagagcaaccaaacatgttaaaatcaatt 9943368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 22536110 - 22536052
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtg 82  Q
    |||||||||||||||||||| |||| |||||||||| |||  || ||||||| ||||||    
T  22536110 aaagtgatttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtg 22536052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 31415417 - 31415379
Alignment:
Q  54 aaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  31415417 aaaagtaagttgaattataaatttgtgtgtaagaatcaa 31415379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 43074028 - 43073970
Alignment:
Q  72 aaatttgtgtgtaagaatcaaaagctacaaatcatagcttcaag-tagaatcaattcta 129  Q
    ||||||| ||||| ||||||||||||||||||| ||| |||||| || |||||||||||    
T  43074028 aaatttgagtgtatgaatcaaaagctacaaatcttagtttcaagttaaaatcaattcta 43073970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 43717355 - 43717317
Alignment:
Q  93 aagctacaaatcatagcttcaagtagaatcaattctact 131  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  43717355 aagctacaaattctagcttcaagtagaatcaattctact 43717317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 16518816 - 16518775
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    |||||||||||||||||| || |||| |||||||||||||||    
T  16518816 aatcaaaagctacaaatcctatcttctagtagaatcaattct 16518775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 33047650 - 33047715
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    |||||||||||||||  ||||| ||||||||| ||||||||||| ||| ||| | ||| |||||||    
T  33047650 aatcaattctactcgtcagcaatcaaacatgtgagaatcaattctacacctccaaaatcaattttg 33047715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 6327115 - 6327159
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattcta 129  Q
    |||||||||| ||||||||  ||| ||||||||||||||||||||    
T  6327115 agaatcaaaaactacaaattttagtttcaagtagaatcaattcta 6327159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 12037100 - 12037056
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattcta 129  Q
    |||||||||||||||||||  ||| ||||| ||||||||||||||    
T  12037100 agaatcaaaagctacaaattttagtttcaactagaatcaattcta 12037056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 30503247 - 30503207
Alignment:
Q  86 gaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||||||| |||| | |||||||||||||||||||    
T  30503247 gaatcaaaagctacgaatcctggcttcaagtagaatcaatt 30503207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 32596103 - 32596035
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||| ||||||||||||  ||| |||||||| | ||| ||||||| ||||||| ||||| ||||||    
T  32596103 aaagtgaattgtgtttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaa 32596035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 33502348 - 33502281
Alignment:
Q  22 gtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||||||||||||||||| |||   ||||||| | ||| ||| ||||||| ||||||||| ||||||    
T  33502348 gtaaagtgatttgtgtttggatacat---tgtaaaagtgagttgaactataaatatgtgtgtaaaaatcaa 33502281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 42650305 - 42650265
Alignment:
Q  90 caaaagctacaaatcatagcttcaagtagaatcaattctac 130  Q
    |||||||||||||| ||| ||||||||||||||||| ||||    
T  42650305 caaaagctacaaattataacttcaagtagaatcaatcctac 42650265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 15677864 - 15677973
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttgac 186  Q
    |||||||||||| ||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||  ||| ||| | ||| |||||| ||    
T  15677864 aatcaaaagctataaatcctagcttcaagtagaatcaattctatttgaaagcaaccaaacatgtcagaatcaattgtacaactccacaatcaattttaac 15677963  T
Q  187 ccctatagaa 196  Q
    |||| |||||    
T  15677964 ccctgtagaa 15677973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 32994292 - 32994365
Alignment:
Q  89 tcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||    
T  32994292 tcaaaagctagaaatcatagcttcaagtagaatcaattctacacgaaagcaaccaaacatatcataatcaattc 32994365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 18355894 - 18355979
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctc 170  Q
    |||||||||||  ||||||| |||||||||  |||||||||||||||||||| ||| || |||||||| ||||||||| |||||||    
T  18355894 agaatcaaaagacacaaatcctagcttcaatcagaatcaattctactcgaaaacaatcatacatgtcaaaatcaattctacatctc 18355979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 32928009 - 32927892
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgta------------agaatcaaaagctacaaatcat 106  Q
    |||| |||||||||||||||||||| ||||||||||||| | ||| ||| ||||||||||||||||            | |||||||||||||||||| |    
T  32928009 aaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcct 32927910  T
Q  107 agcttcaagtagaatcaa 124  Q
    ||||||||||||||||||    
T  32927909 agcttcaagtagaatcaa 32927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 38335909 - 38335981
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaa 159  Q
    |||||||||| ||||||| ||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||    
T  38335909 aatcaaaagcaacaaatcttagcttcaactggaatcaattatactcgaaaacaaacaaacatgtcagaatcaa 38335981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 35495103 - 35494990
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgta------------agaatcaaaagctacaaatcatagct 110  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||| |||| |||||||||||            |||||||||||||||||||| |||||    
T  35495103 taaagtgatttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagct 35495004  T
Q  111 tcaagtagaatcaa 124  Q
    ||| ||||||||||    
T  35495003 tcatgtagaatcaa 35494990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 38257686 - 38257627
Alignment:
Q  22 gtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgt 81  Q
    |||||||||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||    
T  38257686 gtaaagtgatatgtgtttagatgcatttatgtaaaaatgagttgaattataaatttgtgt 38257627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 26100114 - 26100236
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaa------------gaatcaaaagctacaaatcat 106  Q
    |||||||||  ||||||||||||||||||| |||||||| | ||| |||  ||||||||||||||||            ||||||||||||||||||| |    
T  26100114 aaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcct 26100213  T
Q  107 agcttcaagtagaatcaattcta 129  Q
    |||||||| ||||| ||||||||    
T  26100214 agcttcaaatagaaccaattcta 26100236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 26668541 - 26668478
Alignment:
Q  117 agaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaat 180  Q
    |||||||||||||||||| |  || ||||||||| ||||||||||| ||||||| |||||||||    
T  26668541 agaatcaattctactcgacaagaatcaaacatgttagaatcaattctacatctccagaattaat 26668478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 37684517 - 37684464
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaattt 77  Q
    |||||||||||||||||||| |||| |||||||| | ||| |||||||||||||    
T  37684517 aaagtgatttgtgtttggatacatttatgtaaaagtgagttgaattataaattt 37684464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 38868537 - 38868496
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  38868537 agaaccaaaagctacaaatcttagcttcaagtagaatcaatt 38868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10368082 - 10368042
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaat 59  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  10368082 aaggtaaagtgatttgtgtttagatacattcatgtaaaaat 10368042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 32927879 - 32927836
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||    
T  32927879 aatcaattctactggaaagcaaccaaacatgtcagagtcaattc 32927836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 37684444 - 37684401
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    |||||||||||| ||||||| || ||||||||||||||||||||    
T  37684444 agaatcaaaagccacaaatcctaacttcaagtagaatcaattct 37684401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 4662949 - 4662991
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattc 127  Q
    |||| ||||||||||||||| |||||||||||||||| |||||    
T  4662949 agaaacaaaagctacaaatcctagcttcaagtagaataaattc 4662991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 9461510 - 9461560
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataa 73  Q
    ||||||||||||||||||||| ||||||| ||||| | ||| |||||||||    
T  9461510 taaagtgatttgtgtttggatacattcatataaaagtgagttgaattataa 9461560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 5218993 - 5219030
Alignment:
Q  147 atgtcagaatcaattcgacatctctagaattaattttg 184  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  5218993 atgtcagaatcaattctacatctttagaattaattttg 5219030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 7244647 - 7244696
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattctactcga 134  Q
    |||||||||| ||||| ||| ||| |||||||||||||||||||| ||||    
T  7244647 agaatcaaaaactacatatcttagtttcaagtagaatcaattctagtcga 7244696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 7644596 - 7644559
Alignment:
Q  92 aaagctacaaatcatagcttcaagtagaatcaattcta 129  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  7644596 aaagctacaaatcctagctttaagtagaatcaattcta 7644559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 13384700 - 13384741
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||||||||||||  ||||||||| |||||||||||    
T  13384700 agaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 16972032 - 16972105
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||| ||||||||||||| || ||||||||||||| | | | |||  |||||||||||| ||| ||||||    
T  16972032 aaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaa 16972105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 35525403 - 35525362
Alignment:
Q  115 gtagaatcaattctactcgaaagcaagcaaacatgtcagaat 156  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  35525403 gtagaatcaattctactcgacaacaatcaaacatgtcagaat 35525362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 42455901 - 42455856
Alignment:
Q  117 agaatcaattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    ||||||||| |||||| ||||||| ||||||||||| |||||||||    
T  42455901 agaatcaatcctactcaaaagcaaccaaacatgtcaaaatcaattc 42455856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 44141096 - 44141137
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||| ||||||||| || ||||||||||||||||||    
T  44141096 agaatcaaaaactacaaatcctaacttcaagtagaatcaatt 44141137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 39648266 - 39648310
Alignment:
Q  142 caaacatgtcagaatcaattcgacatctctagaattaattttgac 186  Q
    ||||||||||| ||||||||  ||||||||||||| |||||||||    
T  39648266 caaacatgtcaaaatcaattatacatctctagaatcaattttgac 39648310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 11049289 - 11049212
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||| ||||||||||    
T  11049289 agaatcaaaagctacaaatcctagcttcaagtagaatcgattctactcgaaagcaatgaaacatgtctgaatcaattc 11049212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 28287384 - 28287456
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaa 159  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||| ||||||| ||| | ||||||||||||    
T  28287384 aatcaaaagctacaaatccttgcttcaagtagaaccaattctactcaaaagcaaccaaccttgtcagaatcaa 28287456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 7524232 - 7524157
Alignment:
Q  17 tcaaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||||||||||||||||  |||| |||||||| | ||| ||| ||||||||||||||||| ||||||    
T  7524232 tcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaa 7524157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 32370003 - 32370065
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaa 85  Q
    ||||||||||||||||||||| |||||||||||||  ||||  ||||||||||||||||||||    
T  32370003 taaagtgatttgtgtttggatacattcatgtaaaagcaagttcaattataaatttgtgtgtaa 32370065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 1514449 - 1514387
Alignment:
Q  30 atttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||||||||| ||||||||||||||| ||| |||  |||||||||||||||| ||||||    
T  1514449 atttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaa 1514387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 30557613 - 30557441
Alignment:
Q  25 aagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgta----------agaatcaaaagctacaaatcatagcttcaa 114  Q
    ||||||||||||||||||| ||||||| ||||| | ||| ||| |||||||||||||| |          |||||||||| ||||||||| |||||||||    
T  30557613 aagtgatttgtgtttggatacattcatataaaagtgagttgaactataaatttgtgtgaaaatcaattctagaatcaaaaactacaaatcctagcttcaa 30557514  T
Q  115 gt------agaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaatt 181  Q
     |      ||||||| |||||||||  || || ||||||||||||||||||||| ||| ||| ||||| ||||    
T  30557513 ctagaatcagaatcatttctactcggcagtaaccaaacatgtcagaatcaattctacacctccagaatcaatt 30557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 28083934 - 28083975
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  28083934 agaatcaaaagctacaaattctagcttcaagtagaatcaatt 28083975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 2556005 - 2555945
Alignment:
Q  32 ttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||| |||||||| |||||||||||| | ||| ||||||||||||||| ||| ||||||||    
T  2556005 ttgtatttggatgtattcatgtaaaagtgagttgaattataaatttgtatgttagaatcaa 2555945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 6021843 - 6021799
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattcta 129  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||    
T  6021843 agaatcaaaagctacatatcctagcttcaagtagaatcgattcta 6021799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 7790688 - 7790732
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattcta 129  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||    
T  7790688 agaatctaaatctacaaatcataacttcaagtagaatcaattcta 7790732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 34721813 - 34721881
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||||||| |||| || |||| |||||||| ||||| ||| ||||||||||||||| | ||||||    
T  34721813 aaagtgatttgtatttgaatacattgatgtaaaagtaagtcgaactataaatttgtgtgtgaaaatcaa 34721881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 34915182 - 34915110
Alignment:
Q  20 aggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||| |||||| |||||| || ||||||||||||| | ||| |||||||||| | |||||| ||||||||    
T  34915182 aggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaa 34915110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 24587894 - 24587839
Alignment:
Q  121 tcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaat 176  Q
    |||||||||||| | ||||| ||||||||||| ||||||||| ||| |||||||||    
T  24587894 tcaattctactcaagagcaaccaaacatgtcacaatcaattctacacctctagaat 24587839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 28083986 - 28084029
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||    
T  28083986 aatcaattctactcgaaaacaaccaaatatgtcagaatcaattc 28084029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 45660580 - 45660646
Alignment:
Q  26 agtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||| |||||||||  | |||||||||| ||||| ||||| || |||||||||||| ||||||    
T  45660580 agtgatttatgtttggataaactcatgtaaaagtaagttgaattgtagatttgtgtgtaaaaatcaa 45660646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 3134781 - 3134854
Alignment:
Q  88 atcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||||| |||||||| || ||| ||||||||||||||  |||  ||||||| |||| |||||| ||||||||    
T  3134781 atcaaaagttacaaatcttatcttaaagtagaatcaattacacttaaaagcaatcaaatatgtcaaaatcaatt 3134854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 10324906 - 10324979
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||| ||||| ||||| |||| |||||||| | |||| ||  ||||||||| |||||| ||||||    
T  10324906 aaggtaaagtgatatgtgtatggatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaa 10324979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 8381984 - 8381904
Alignment:
Q  106 tagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttgac 186  Q
    ||||||||||||||||||||||| ||    || || ||||||||||| ||||||||  | | ||||||||| |||||||||    
T  8381984 tagcttcaagtagaatcaattctgcttttgaggaaccaaacatgtcaaaatcaattttatacctctagaatcaattttgac 8381904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 49824876 - 49824824
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctct 171  Q
    |||||||| ||||||||||||| |||| |||||| ||||||||| ||| ||||    
T  49824876 aatcaattgtactcgaaagcaaacaaagatgtcaaaatcaattctacacctct 49824824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 6895996 - 6896087
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaat 176  Q
    |||||||||||||||||||| || ||||| |||||||||||| ||||||| | ||| ||||||||||| ||||||||| ||||||| |||||    
T  6895996 agaatcaaaagctacaaatcctaacttcaggtagaatcaattgtactcgacaacaaccaaacatgtcataatcaattctacatctccagaat 6896087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 957595 - 957745
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaa------------gaatcaaaagctacaaatcatagct 110  Q
    |||| |||||| ||||||||| ||||||||||||||| |||  |||| ||| |||||||||||            ||||||||| ||| ||||| |||||    
T  957595 taaaatgatttatgtttggatacattcatgtaaaaatgagttaaattttaagtttgtgtgtaaaaatcgattatggaatcaaaaactataaatcttagct 957694  T
Q  111 tcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
     |||||| |||||||||||||||||||||| ||||||||||  ||||||||    
T  957695 acaagtaaaatcaattctactcgaaagcaatcaaacatgtcgtaatcaatt 957745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 765432 - 765475
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  765432 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 4910947 - 4910906
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4910947 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 4910906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 5724728 - 5724805
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttgacccctatagaa 196  Q
    ||||||||||||  |||||||  ||||||||||||||||||||| |||  |||||||||||||||| ||||| |||||    
T  5724728 aatcaattctacctgaaagcatccaaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaa 5724805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 3289857 - 3289793
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaa 88  Q
    ||||||||||||||||||||| |||| |||||||| | ||| ||||||||||||||||||| ||||    
T  3289857 taaagtgatttgtgtttggatacatt-atgtaaaagtgagttgaattataaatttgtgtgttagaa 3289793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 33136581 - 33136646
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    |||||||| ||||||| ||||| ||||||||||| ||||||||  ||| |||||||||||||||||    
T  33136581 aatcaattatactcgagagcaaccaaacatgtcaaaatcaattatacacctctagaattaattttg 33136646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 3482158 - 3482090
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||||| | ||||||    
T  3482158 aaagtgatttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaa 3482090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 16540144 - 16540105
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  16540144 aatcaaaagctacaaatcctagcttcaagtagaatcaatt 16540105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 4908074 - 4907957
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgt------------aagaatcaaaagctacaaatcatagctt 111  Q
    ||||||||||||||||||||  | |||||||||| ||||| ||||||||||||||| |||             |||||||||| ||||||||||||||||    
T  4908074 aaagtgatttgtgtttggataaaatcatgtaaaagtaagt-gaattataaatttgtttgtgaaggtaaattatagaatcaaaaactacaaatcatagctt 4907976  T
Q  112 caagtagaatcaattctac 130  Q
    ||| || ||||||||||||    
T  4907975 caaataaaatcaattctac 4907957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 25195339 - 25195396
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgt 81  Q
    |||||||||||||||||||| |||| |||||||| | ||| ||||| |||||||||||    
T  25195339 aaagtgatttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgt 25195396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 25195460 - 25195504
Alignment:
Q  117 agaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||    
T  25195460 agaatcaattatactcgatagcaaccaaacatgtcagaatcaatt 25195504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 6654136 - 6654179
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||    
T  6654136 agaattaaaagctacaaatcctagcttcaagtagaattaattct 6654179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 1485248 - 1485322
Alignment:
Q  123 aattctactcgaaagcaagcaaacatgtca-gaatcaattcgacatctctagaattaattttgacccctatagaa 196  Q
    |||||||||| | ||||| ||||||||||| |||||||||| ||| |||||||||  || ||||||||| |||||    
T  1485248 aattctactcaagagcaaacaaacatgtcaagaatcaattctacacctctagaatccatattgacccctctagaa 1485322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 8856424 - 8856362
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgt 81  Q
    |||||||| |||||||||||||||| ||||||||| ||| | ||| |||  ||||||||||||    
T  8856424 aaggtaaaatgatttgtgtttggatacattcatgtgaaagtgagttgaaacataaatttgtgt 8856362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 18690662 - 18690620
Alignment:
Q  116 tagaatcaattctactcgaaagcaagcaaacatgtcagaatca 158  Q
    |||||||||||||||| |||||||| ||||||||||| |||||    
T  18690662 tagaatcaattctacttgaaagcaaccaaacatgtcaaaatca 18690620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 5724676 - 5724717
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  5724676 agaataaaaagttacaaatcctagcttcaagtagaatcaatt 5724717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 7952755 - 7952796
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||||||||||||| | |||||||||||||| ||||    
T  7952755 agaatcaaaagctacaaatcctcgcttcaagtagaataaatt 7952796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 30927080 - 30927039
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    ||||||||||||| |||| |||||||||||| ||||||||||    
T  30927080 aatcaaaagctacgaatcttagcttcaagtataatcaattct 30927039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 31725815 - 31725766
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattctactcga 134  Q
    ||||||||||  || ||||| ||| |||||||||||||||||||||||||    
T  31725815 agaatcaaaaattaaaaatcctaggttcaagtagaatcaattctactcga 31725766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 34621003 - 34620930
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||||| ||||||||| |||| |||||||| | ||| |||  ||||||||  |||||| ||||||    
T  34621003 aaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaa 34620930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 34748440 - 34748367
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||||| ||||||||| |||| |||||||| | ||| |||  ||||||||  |||||| ||||||    
T  34748440 aaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaa 34748367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 2002566 - 2002606
Alignment:
Q  122 caattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    ||||||||||||||| ||| ||||||||||| |||||||||    
T  2002566 caattctactcgaaaacaaccaaacatgtcaaaatcaattc 2002606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 5681397 - 5681437
Alignment:
Q  122 caattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    |||||||||||||||  |||||||||| |||||||||||||    
T  5681397 caattctactcgaaaataagcaaacatatcagaatcaattc 5681437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 18637323 - 18637212
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||||| |||||||| |||||||||  |||||||||   || || |||||| |||||||    
T  18637323 agaatcaaaagctacttatcttagcttcaagtggaatcaattctacttgaaagcaaccaaacatgtaggaatcaattgttcacctttagaatcaattttg 18637224  T
Q  185 acccctatagaa 196  Q
    |||||| |||||    
T  18637223 acccctttagaa 18637212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 39097279 - 39097188
Alignment:
Q  91 aaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattt 182  Q
    ||||| |||||||  |||||||||||||||||||||||||  |||| ||| ||||||||||| ||||||||| ||| ||||| ||| |||||    
T  39097279 aaaagttacaaattttagcttcaagtagaatcaattctacctgaaaccaaccaaacatgtcaaaatcaattctacacctctataatcaattt 39097188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 9818773 - 9818732
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9818773 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 9818732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 18851130 - 18851169
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18851130 aatcaaaagctacaaatcatagcttcaagtagaatcaatt 18851169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 10898709 - 10898643
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttga 185  Q
    |||||||| ||||||| ||||| ||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  10898709 aatcaattttactcgagagcaaccaaacatgtcaaaattaattcgacagctctagaatcaattttga 10898643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 25548519 - 25548462
Alignment:
Q  105 atagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    |||||||||||||||||||||| ||||  ||||||| ||||||||||| |||||||||    
T  25548519 atagcttcaagtagaatcaattttacttaaaagcaatcaaacatgtcataatcaattc 25548462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 39229191 - 39229136
Alignment:
Q  105 atagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaat 160  Q
    |||||||||||||||||||||| |||| ||||| || ||||||||||| |||||||    
T  39229191 atagcttcaagtagaatcaattttacttgaaagtaatcaaacatgtcataatcaat 39229136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 3043099 - 3043168
Alignment:
Q  116 tagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttga 185  Q
    |||||||||||||| ||  ||||||  |||||||||| ||||||||| ||| ||||||||| ||||||||    
T  3043099 tagaatcaattctattcttaagcaactaaacatgtcaaaatcaattctacacctctagaatcaattttga 3043168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 6951351 - 6951392
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  6951351 agaatcaaaagctacaaatcctaacttcaagtagaatcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 38845482 - 38845441
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  38845482 agaatcaaaaactacaaatcttagcttcaagtagaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 31906296 - 31906257
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  31906296 aatcaaaagttacaaatcatagcttcaagtaaaatcaatt 31906257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 35563656 - 35563586
Alignment:
Q  91 aaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||| ||||| |||||| ||||||||||||| ||||||||||||||  ||  |||||||| ||||| ||||    
T  35563656 aaaaactacacatcataacttcaagtagaattaattctactcgaaaataacaaaacatgtgagaattaatt 35563586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 34250397 - 34250441
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattcta 129  Q
    ||||||||||||||||| |  |||| |||||||||||||||||||    
T  34250397 agaatcaaaagctacaatttctagcatcaagtagaatcaattcta 34250441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 42858220 - 42858152
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||| |||||||| ||  |||||||||||| | ||| ||| ||||||||||||||| | ||||||    
T  42858220 aaagtgatctgtgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaa 42858152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 31013131 - 31013062
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||||||||||||||||||||||||||| || | ||| ||||| ||||||||||||| ||||||||    
T  31013131 taaagtgatttgtgtttggatgcattcatgtacaagtgagttgaattctaaatttgtgtgttagaatcaa 31013062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 31708211 - 31708280
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||| ||||||||||||| ||||||||||||| | ||| ||||||||||||||||||| ||||||||    
T  31708211 taaagtggtttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaa 31708280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 48410910 - 48410981
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttgacccct 190  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| |||  | |||||| |||| ||||||||    
T  48410910 aatcaattctactcgaaagcaatcaaacatctcagaatcaattccacacttatagaatcaattctgacccct 48410981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 42375561 - 42375488
Alignment:
Q  88 atcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||| ||||||||| |||||||||||||||||  |||||||| ||  |||| |||| |||||||||||||||    
T  42375561 atcaaacgctacaaattatagcttcaagtagaattgattctacttgaccgcaaccaaaaatgtcagaatcaatt 42375488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 42404275 - 42404202
Alignment:
Q  88 atcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||| ||||||||| |||||||||||||||||  |||||||| ||  |||| |||| |||||||||||||||    
T  42404275 atcaaacgctacaaattatagcttcaagtagaattgattctacttgaccgcaaccaaaaatgtcagaatcaatt 42404202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 3845208 - 3845275
Alignment:
Q  117 agaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    ||||||||||||||| || | ||| ||||||||||| ||||||||| ||| ||||||||| |||||||    
T  3845208 agaatcaattctacttgagatcaaacaaacatgtcaaaatcaattctacacctctagaatcaattttg 3845275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 52364090 - 52364047
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  52364090 agaatcaaaagctataaatcatagcttcaagtagaaacaattct 52364047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 54596807 - 54596740
Alignment:
Q  117 agaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    ||||||||||||||| |||| ||| ||||||||||| ||||||||  ||| ||||| |||||||||||    
T  54596807 agaatcaattctacttgaaaacaaccaaacatgtcataatcaattttacacctctaaaattaattttg 54596740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 1441479 - 1441544
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    |||||||||||||| |||| || ||||||||||| | ||||||| ||| |||||||| ||||||||    
T  1441479 aatcaattctactcaaaagaaaccaaacatgtcaaactcaattctacacctctagaaataattttg 1441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 21367147 - 21367211
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatg 149  Q
    ||||||| |||||||||| | ||| |||| ||||||| | |||||||||||||||| ||||||||    
T  21367147 agaatcagaagctacaaaccctagattcatgtagaataagttctactcgaaagcaaccaaacatg 21367211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 32112028 - 32111988
Alignment:
Q  90 caaaagctacaaatcatagcttcaagtagaatcaattctac 130  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  32112028 caaaagctacaaattgtagcttcaagtagaatcaattctac 32111988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 39256660 - 39256596
Alignment:
Q  121 tcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttga 185  Q
    ||||||||||| || || || ||||||||||| ||||||||| ||| |||||||| |||||||||    
T  39256660 tcaattctacttgagagtaatcaaacatgtcaaaatcaattctacacctctagaactaattttga 39256596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 40339259 - 40339219
Alignment:
Q  91 aaaagctacaaatcatagcttcaagtagaatcaattctact 131  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  40339259 aaaagctacaaattgtagcttcaagtagaatcaattctact 40339219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 41115413 - 41115453
Alignment:
Q  90 caaaagctacaaatcatagcttcaagtagaatcaattctac 130  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  41115413 caaaagctacaaattctagcttcaagtagaatcaattctac 41115453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 35264507 - 35264586
Alignment:
Q  117 agaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttgacccctatagaa 196  Q
    ||||||||||||  |||| ||||| ||||||||| ||||||||||  ||  ||||||||| |||||||||| || |||||    
T  35264507 agaatcaattctcttcgagagcaaccaaacatgtgagaatcaattttactcctctagaataaattttgaccactctagaa 35264586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 42484469 - 42484531
Alignment:
Q  20 aggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgt 83  Q
    |||||||||||||||||||| ||||||| | ||||||| | ||| | |||||||||||||||||    
T  42484469 aggtaaagtgatttgtgtttagatgcatac-tgtaaaagtgagttggattataaatttgtgtgt 42484531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 32523306 - 32523336
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgt 53  Q
    |||||||||||||||||||||||||||||||    
T  32523306 taaagtgatttgtgtttggatgcattcatgt 32523336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 41596120 - 41596190
Alignment:
Q  22 gtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||||||| ||||||||| |||||||| |||| | |||  || |||||| |||||||||| ||||||    
T  41596120 gtaaagtgatttctgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaa 41596190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 35058348 - 35058291
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaat 176  Q
    |||||||||||||||| ||| | ||||||||| |||| || ||| |||||||||||||    
T  35058348 aatcaattctactcgagagccatcaaacatgtgagaaacagttctacatctctagaat 35058291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 35253435 - 35253508
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||||| | ||||||  || |||||||||| | ||| |||| ||||||||| |||||| ||||||    
T  35253435 aaggtaaagtgatttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaa 35253508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 40736583 - 40736624
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||||| |||||| |||| |||||||||||||||||    
T  40736583 agaatcaaaagcgacaaattatagtttcaagtagaatcaatt 40736624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 4401345 - 4401397
Alignment:
Q  22 gtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaa 74  Q
    ||||||| |||| ||| | ||| ||||||||||||||||||| ||||||||||    
T  4401345 gtaaagtaatttatgtatagatacattcatgtaaaaataagttgaattataaa 4401397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 1616429 - 1616354
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||||||||||||||||  |||||| |||||||||||||||||||||| | ||| ||| ||||||||||||||||    
T  1616429 agaatcaaaagctacaaattgtagctt-aagtagaatcaattctactcgataacaaccaatcatgtcagaatcaatt 1616354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 35065176 - 35065107
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||||||||||| ||||||||||||| | ||| ||  ||||||||||||||||| ||||||    
T  35065176 taaagtgatttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaa 35065107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 35065050 - 35064979
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttgacccct 190  Q
    |||||||||||||||||||||| |||| |||||| ||||||||| ||| ||| | ||| |||||||||||||    
T  35065050 aatcaattctactcgaaagcaaccaaaaatgtcataatcaattctacacctccataatcaattttgacccct 35064979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 30357549 - 30357507
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaattcta 129  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  30357549 aatcaaaagctacaaatcacagcttcaagtagaatcaattcta 30357507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 49138933 - 49138998
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    |||||||| |||| |||| ||| ||||||||||||||||||||| ||| ||||||||| |||||||    
T  49138933 aatcaattttacttgaaaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttg 49138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 8604668 - 8604709
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||| ||||||||||||| |||||||||||||||||||||    
T  8604668 agaatcgaaagctacaaatcttagcttcaagtagaatcaatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 45694723 - 45694658
Alignment:
Q  27 gtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||| |||||||||||| ||||||||||||||| |||  || ||||||| ||||||| ||||||||    
T  45694723 gtgagttgtgtttggatacattcatgtaaaaatgagttcaactataaatgtgtgtgttagaatcaa 45694658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 21691312 - 21691380
Alignment:
Q  113 aagtagaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaatt 181  Q
    ||||||||||||| |||||||| | ||| |||| |||||||||||||||| ||| ||| ||||| ||||    
T  21691312 aagtagaatcaatactactcgacaacaaccaaatatgtcagaatcaattctacacctccagaatcaatt 21691380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 30357684 - 30357644
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaattc 127  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  30357684 aatcaaaagctacagatcatagcttcaattagaatcaattc 30357644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 32818336 - 32818411
Alignment:
Q  19 aaggtaaagtgattt--gtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||| |  |||||||||| ||||||||||||| | ||| ||| |||||||||||||| || ||||||    
T  32818336 aaggtaaagtgatatatgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaa 32818411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 14596728 - 14596685
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    |||||||||| || |||| |||||||||||||||||||||||||    
T  14596728 agaatcaaaaactgcaaaacatagcttcaagtagaatcaattct 14596685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 21691186 - 21691253
Alignment:
Q  25 aagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||||||||||||||||  |||||||||||| |  || ||| ||||||||||||||| | ||||||    
T  21691186 aagtgatttgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaa 21691253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 25319034 - 25318991
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattc 162  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||    
T  25319034 aatcaattctactcgagagcaaccaaacatgtcaaaatcaattc 25318991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 29779106 - 29779145
Alignment:
Q  91 aaaagctacaaatcatagcttcaagtagaatcaattctac 130  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  29779106 aaaagctacaaattctagcttcaagtagaatcaattctac 29779145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 32818416 - 32818459
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    |||||||||||||||||||  ||||||||| |||||||||||||    
T  32818416 agaatcaaaagctacaaattctagcttcaaatagaatcaattct 32818459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 53713607 - 53713650
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||    
T  53713607 agaatcaaaagctacaaatcgtagcttcaagtaaaattaattct 53713650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 53913675 - 53913746
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttgacccct 190  Q
    |||||||||||||||| | ||| |||||||||| |||||||||| |||  |  ||||| |||||||||||||    
T  53913675 aatcaattctactcgacaacaaacaaacatgtcggaatcaattcaacactttcagaatgaattttgacccct 53913746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 8604590 - 8604628
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaa 57  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  8604590 aaggtaaagtgatttatgtttggatacattcatgtaaaa 8604628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 1099823 - 1099758
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    |||||||||| ||||| ||||| |||| || ||| |||||||||  |||||||||||| |||||||    
T  1099823 aatcaattctgctcgagagcaaccaaatatttcaaaatcaattctgcatctctagaatcaattttg 1099758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 6464124 - 6464055
Alignment:
Q  23 taaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||| ||||||||||| ||  |||||| ||||| ||| ||||||||||||||||   |||||||||||    
T  6464124 taaagttatttgtgtttgaatatattcatataaaagtaaatagaattataaatttgaacgtaagaatcaa 6464055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 9134647 - 9134606
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    |||||||||||||||||  ||||||||||||| |||||||||    
T  9134647 aatcaaaagctacaaattttagcttcaagtaggatcaattct 9134606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 33560669 - 33560710
Alignment:
Q  119 aatcaattctactcgaaagcaagcaaacatgtcagaatcaat 160  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  33560669 aatcaattctactcgagagcaaccaaacatgtcaaaatcaat 33560710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 50061674 - 50061715
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||| ||||||||| || ||||||||||||||||||    
T  50061674 agaatcaaaaactacaaatcctaacttcaagtagaatcaatt 50061715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 11271587 - 11271627
Alignment:
Q  89 tcaaaagctacaaatcatagcttcaag-tagaatcaattct 128  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  11271587 tcaaaagctacaaatcctagcttcaagttagaatcaattct 11271627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 16551946 - 16551878
Alignment:
Q  117 agaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttga 185  Q
    |||||||  |||| |||| ||||| || |||||||||||||||||| ||| ||||| ||| ||||||||    
T  16551946 agaatcagctctattcgacagcaaccatacatgtcagaatcaattctacacctctaaaatcaattttga 16551878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 29729023 - 29728947
Alignment:
Q  86 gaatcaaaagctacaaatcatagcttcaagt-agaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||||||||| ||| |  || |||||||| | |||||||||||||||| ||||| ||||| ||||| ||||||||    
T  29729023 gaatcaaaagcttcaatttttaacttcaagttataatcaattctactcgagagcaaccaaacttgtcaaaatcaatt 29728947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 33456413 - 33456369
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattcta 129  Q
    |||||||||||||||||||||||| || || |||||| |||||||    
T  33456413 agaatcaaaagctacaaatcatagttttaaatagaataaattcta 33456369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 37353431 - 37353391
Alignment:
Q  121 tcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||||||||||||| ||||||||||||| | ||||||||    
T  37353431 tcaattctactcgaaaacaagcaaacatgttaaaatcaatt 37353391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 37365405 - 37365365
Alignment:
Q  121 tcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||||||||||||||| ||||||||||||| | ||||||||    
T  37365405 tcaattctactcgaaaacaagcaaacatgttaaaatcaatt 37365365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 39211068 - 39211112
Alignment:
Q  117 agaatcaattctactcgaaagcaagcaaacatgtcagaatcaatt 161  Q
    |||| ||||| ||||||| ||||| ||||||||||||||||||||    
T  39211068 agaaccaattttactcgatagcaaccaaacatgtcagaatcaatt 39211112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 45011986 - 45011918
Alignment:
Q  24 aaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    |||||| |||| ||||| || ||||||| ||||| | |||| |||||||||||||||||| | ||||||    
T  45011986 aaagtggtttgggtttgaatacattcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaa 45011918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 49138809 - 49138845
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaat 121  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  49138809 agaatcaaaagttacaaatcctagcttcaagtagaat 49138845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 31815 - 31748
Alignment:
Q  117 agaatcaattctactcgaaagcaagcaaacatgtcagaatcaattcgacatctctagaattaattttg 184  Q
    |||||||||| ||||||| | ||| ||||||||||||||||||||| ||| ||||||||| |||||||    
T  31815 agaatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttg 31748  T

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Target: scaffold0168; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 31863 - 31824
Alignment:
Q  87 aatcaaaagctacaaatcatagcttcaagtagaatcaatt 126  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  31863 aatcaaaagctacaaatcctagcttcaagtataatcaatt 31824  T

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Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 14082 - 14155
Alignment:
Q  19 aaggtaaagtgatttgtgtttggatgcattcatgtaaaaataagtagaattataaatttgtgtgtaagaatcaa 92  Q
    ||||||||||||||| ||||||||| ||||||||| ||| | ||| |||  ||||||||| |||||| ||||||    
T  14082 aaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaa 14155  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 220650 - 220693
Alignment:
Q  85 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 128  Q
    |||||||||| || |||| |||||||||||||||||||||||||    
T  220650 agaatcaaaaactgcaaaacatagcttcaagtagaatcaattct 220693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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