View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1529_low_10 (Length: 417)

Name: NF1529_low_10
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1529_low_10
NF1529_low_10
[»] chr5 (7 HSPs)
chr5 (233-398)||(25613981-25614145)
chr5 (237-398)||(31262123-31262284)
chr5 (19-106)||(25614248-25614335)
chr5 (19-103)||(31262373-31262457)
chr5 (166-218)||(25614136-25614188)
chr5 (261-366)||(23940411-23940516)
chr5 (19-75)||(24005049-24005105)
[»] scaffold1089 (2 HSPs)
scaffold1089 (245-366)||(860-981)
scaffold1089 (19-76)||(709-766)
[»] chr6 (1 HSPs)
chr6 (19-76)||(7860889-7860946)
[»] chr3 (1 HSPs)
chr3 (245-301)||(43693770-43693826)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 9e-77; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 233 - 398
Target Start/End: Complemental strand, 25614145 - 25613981
Alignment:
Q  233 aaagtggagtctacaaacccttctgatgaaaagaacttgaagctttgggcattgctggagcaattctaccactccattccagccatgactgaagctatac 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  25614145 aaagtggagtctacaaacccttctgatgaaaagaacttgaagctttgggcattgctggagcaattctaccactccattccagccatgaatgaagccatac 25614046  T
Q  333 aaccatagtttaaggtgaattaagttttgaaacaatgggatggttttgaaaatattttctggtgcc 398  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25614045 aaccatagtttaatgtgaattaagttttgaaacaat-ggatggttttgaaaatattttctggtgcc 25613981  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 398
Target Start/End: Complemental strand, 31262284 - 31262123
Alignment:
Q  237 tggagtctacaaacccttctgatgaaaagaacttgaagctttgggcattgctggagcaattctaccactccattccagccatgactgaagctatacaacc 336  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||  ||||||||    
T  31262284 tggagtctacaaacccttctcacaaaaagaacttgaagctttgggcaatgctggagcaattctaccacaccatcccagccatgaatgaagtcatacaacc 31262185  T
Q  337 atagtttaaggtgaattaagttttgaaacaatgggatggttttgaaaatattttctggtgcc 398  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  31262184 atagtttaatgtgaattaaattttgaaacaatggaatggttttgaaagtattttctggtgcc 31262123  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 25614335 - 25614248
Alignment:
Q  19 acatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattccatgggtagactccaattccactgtaagagg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25614335 acatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattccatgggtagactccaattccactgtaagagg 25614248  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 31262457 - 31262373
Alignment:
Q  19 acatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattccatgggtagactccaattccactgtaag 103  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |  |||||||||||    
T  31262457 acatgacctcaagtgacacgaaatacattcaagagccaaaattgggcatttccattccttgtctagactcgagatccactgtaag 31262373  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 25614188 - 25614136
Alignment:
Q  166 ccattgagataaaatgaaaattagagatcaagaatgttgttcaaaagtggagt 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25614188 ccattgagataaaatgaaaattagaggtcaagaatgttgttcaaaagtggagt 25614136  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 23940411 - 23940516
Alignment:
Q  261 aaaagaacttgaagctttgggcattgctggagcaattctaccactccattccagccatgactgaagctatacaaccatagtttaaggtgaattaagtttt 360  Q
    ||||||| ||||||||| || || | || |||||| |||||||| |||| ||||||||||  ||||  ||  |||||||||  ||  |||||||||||||    
T  23940411 aaaagaatttgaagcttgggacaattcttgagcaaatctaccacaccatcccagccatgaaagaagtgattaaaccatagtccaatatgaattaagtttt 23940510  T
Q  361 gaaaca 366  Q
    ||||||    
T  23940511 gaaaca 23940516  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 24005049 - 24005105
Alignment:
Q  19 acatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattc 75  Q
    |||||| ||||||||| | |||| ||||||| || || |||||||||||||||||||    
T  24005049 acatgatctgaggtgagaagaaacacattcaggaaccgaaattgggcatttccattc 24005105  T

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Target: scaffold1089 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 366
Target Start/End: Original strand, 860 - 981
Alignment:
Q  245 acaaacccttctgatgaaaagaacttgaagctttgggcattgctggagcaattctaccactccattccagccatgactgaagctatacaaccatagttta 344  Q
    ||||||| |||| || |||| || ||||||||| || ||||| |||||||||| ||| |  |||| ||||||||||  ||||| ||| |||  |||||||    
T  860 acaaacctttctaataaaaacaatttgaagcttgggacattgttggagcaattgtactatgccatcccagccatgaaagaagcaataaaactgtagttta 959  T
Q  345 aggtgaattaagttttgaaaca 366  Q
    | ||||||||||||| ||||||    
T  960 atgtgaattaagtttcgaaaca 981  T

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Target: scaffold1089; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 709 - 766
Alignment:
Q  19 acatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 76  Q
    |||||| ||||||||| |||||| |||||||||| || || |||| ||||||||||||    
T  709 acatgatctgaggtgagacgaaacacattcaagaaccgaatttggccatttccattcc 766  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 7860946 - 7860889
Alignment:
Q  19 acatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 76  Q
    |||||| ||||||||| ||||||| |||| | || || ||||||||||||||||||||    
T  7860946 acatgatctgaggtgagacgaaatgcatttaggaaccgaaattgggcatttccattcc 7860889  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 43693770 - 43693826
Alignment:
Q  245 acaaacccttctgatgaaaagaacttgaagctttgggcattgctggagcaattctac 301  Q
    ||||||| |||| |||||||||| ||||||||| || || | |||||||||||||||    
T  43693770 acaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctac 43693826  T

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