View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_11 (Length: 402)
Name: NF1529_low_11
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 6263686 - 6263314
Alignment:
| Q |
18 |
cttgctaatcttgaaatatcttctgaacatcaagccataaagattgcaaatagagtagaggcttctatttatatttggcataaaaagaccaactcaaagc |
117 |
Q |
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| T |
6263686 |
cttgctagtcttgaaatatcttctgaacatcaagccataaagattgcaaatagagtagaggcttctatttatatttggcataaaaagaccaactcaaagc |
6263587 |
T |
|
| Q |
118 |
ctgcaaatcgcgctacgagatcaagttcaagatcatcatggggaatgttcaaggatctaatagttgaaggagacaaaagtgaaatgcttatagagagagg |
217 |
Q |
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| T |
6263586 |
ctgcaaatcgcgctacgagatcaagttcaagatcatcatggggaatgttcaaggatctaatagttgaaggagacaaaagtgaaatgcttatagagagagg |
6263487 |
T |
|
| Q |
218 |
agaaacccttctactatctttgaagcaacattttccttttctccctcaaacatccttagatgtgagcaaaatccaatgcaacaaggtttgttactatgtt |
317 |
Q |
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| T |
6263486 |
agaaacccttctactatctttgaagcaacattttccttttctccctcaaacatccttagatgtgagcaaaatccaatgcaacaaggtttgttattatgtt |
6263387 |
T |
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| Q |
318 |
tcaatcatgttctatcctaaatctctttggcttaaatgtattttcgatccctaattcttgtcttatttatgat |
390 |
Q |
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| T |
6263386 |
tcaatcatgttttatcctaaatctttttggcttaaatgtattttcgatccctaattcttgtcttatttatgat |
6263314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 34 - 308
Target Start/End: Complemental strand, 23781970 - 23781696
Alignment:
| Q |
34 |
tatcttctgaacatcaagccataaagattgcaaatagagtagaggcttctatttatatttggcataaaaagaccaactcaaagcctgcaaatcgcgctac |
133 |
Q |
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| T |
23781970 |
tatcttctgaacatcaagctatagagatcgcaaaccgagcagaagcttccatgtatatttggcgtaaaaagacaaattcaaagcctgctagtgtcagtgg |
23781871 |
T |
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| Q |
134 |
gagatcaagttcaagatcatcatggggaatgttcaaggatctaatagttgaaggagacaaaagtgaaatgcttatagagagaggagaaacccttctacta |
233 |
Q |
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||||||||||||||| ||||||||| |||| ||||||||||||| ||||| | |||||| || ||| | || |||||||| |||||||||||| || |
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| T |
23781870 |
cagatcaagttcaagaacatcatgggaaatggtcaaggatctaatggttgatgcagacaagagggaactatttgcagagagagcagaaacccttcttctt |
23781771 |
T |
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| Q |
234 |
tctttgaagcaacattttccttttctccctcaaacatccttagatgtgagcaaaatccaatgcaacaaggtttgt |
308 |
Q |
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| T |
23781770 |
accttaaagcagcgttttcccggtctccctcaaacagctttggatatgagcaaaatccaatataacaaggtttgt |
23781696 |
T |
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