View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_12 (Length: 397)
Name: NF1529_low_12
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_12 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 13660523 - 13660134
Alignment:
| Q |
1 |
ctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatacaccttgtacttcataatgacttataatattta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13660523 |
ctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatatgccttgtacttcataatgacttataatattta |
13660424 |
T |
|
| Q |
101 |
cttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660423 |
cttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatc |
13660324 |
T |
|
| Q |
201 |
aggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660323 |
aggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgc |
13660224 |
T |
|
| Q |
301 |
atcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatc |
390 |
Q |
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| T |
13660223 |
atcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatc |
13660134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 13653023 - 13652634
Alignment:
| Q |
1 |
ctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatacaccttgtacttcataatgacttataatattta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| || | | || |
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| T |
13653023 |
ctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatactccttgtgtttcattatgacttttagtgtcta |
13652924 |
T |
|
| Q |
101 |
cttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatc |
200 |
Q |
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|||| || ||| | || |||| |||||| ||||||| ||||||||| |||| ||||||| || |||||||||||||||||| |||||||||||| ||||| |
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| T |
13652923 |
cttcagcagctacatctaacaggagcattcgaaccactgataatcgagttcttgggtgctccgccatcctccatgcaacagttaaggcttcatggtcatc |
13652824 |
T |
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| Q |
201 |
aggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgc |
300 |
Q |
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||| || |||| ||| |||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13652823 |
agggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacgatcaacaaagattcccacagagcaaggtgcagtttgc |
13652724 |
T |
|
| Q |
301 |
atcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatc |
390 |
Q |
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| T |
13652723 |
atcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatc |
13652634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 115 - 383
Target Start/End: Original strand, 437866 - 438134
Alignment:
| Q |
115 |
tcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataa |
214 |
Q |
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||||||| |||||||||||||| ||||||| |||||||| | | || |||| ||||||||||||||||||||||| ||||||||||||| |||| || |
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| T |
437866 |
tcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaa |
437965 |
T |
|
| Q |
215 |
agatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtt |
314 |
Q |
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||||||||||||| ||||| || | ||| || ||||||||||| ||| || ||||| ||||||||||||||||||| | |||||||||||||| ||| |
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| T |
437966 |
agatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtt |
438065 |
T |
|
| Q |
315 |
tatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaag |
383 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
438066 |
tatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaag |
438134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 165 - 383
Target Start/End: Complemental strand, 28608988 - 28608770
Alignment:
| Q |
165 |
catcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacga |
264 |
Q |
| |
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|||||||||||| |||| ||| ||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||| || ||||||||||||||| |
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| T |
28608988 |
catcctccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
28608889 |
T |
|
| Q |
265 |
tcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta |
364 |
Q |
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|||||||| | ||||||||||||||||| | |||||||||||||| ||||||||||||| | |||||| ||||||||| | ||||||| | ||||| |
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| T |
28608888 |
tcaacaaataatcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggactta |
28608789 |
T |
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| Q |
365 |
agtgtttatggaatggaag |
383 |
Q |
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||||| ||||||||||| |
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| T |
28608788 |
gttgtttgtggaatggaag |
28608770 |
T |
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