View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_13 (Length: 383)
Name: NF1529_low_13
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 60 - 373
Target Start/End: Original strand, 46655370 - 46655674
Alignment:
| Q |
60 |
acggttggaagcattaaagcttgctttggaattgggggctgattttatagaaatggagttcaaggtataatattacagacagtactcacaaaatttacat |
159 |
Q |
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| T |
46655370 |
acggttggaagcattaaagcttgctttggaattgggggctgattttatagaaatgaagttcaaggtataatattacagacagtactcacaaaatttacat |
46655469 |
T |
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| Q |
160 |
gaaatagtacagtacaatgctctatttgcactagttgtgtgaaa----gatcgctttcattctactaatctttgtctctaatagcattaagaaaatgtat |
255 |
Q |
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| T |
46655470 |
gaaatagtacagtacaatgctctatttgcactagttgtgtgaaagatcgatcgctttcattctaccaatctttgtctctaatagcattaaaaaaatgtat |
46655569 |
T |
|
| Q |
256 |
cagcatcataggtcctgtcggagattgataaatgataaccaattaatgatgtttttgaagatcaaactagatttactttatcaccatccctttcttccac |
355 |
Q |
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| T |
46655570 |
cagcatcataggtcctgtcggagattgataaatgatgaccaattaatgatgtttttgaagatcaaac-------------tcaccatccctttcttccac |
46655656 |
T |
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| Q |
356 |
atctcttttatagtagta |
373 |
Q |
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|||||||||||||||||| |
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| T |
46655657 |
atctcttttatagtagta |
46655674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 127 - 379
Target Start/End: Complemental strand, 47103818 - 47103566
Alignment:
| Q |
127 |
taatattacagacagtactcacaaaatttacatgaaatagtacagtacaatgctctatttgcactagttgtgtgaaagatcgctttcattctactaatct |
226 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47103818 |
taatattacagacagtactcacaaaatttacattaaatagtacagtacagtgttctatttgcactagttgtgtgaaagatcgctttcattctaccaatct |
47103719 |
T |
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| Q |
227 |
ttgtctctaatagcattaagaaaatgtatcagcatcataggtcctgtcggagattgataaatgataaccaattaatgatgtttttgaagatcaaactaga |
326 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47103718 |
ttgtctctaatagcattaagaaaatgtatctgcatcataggtcctgtcggagattgataaatgatgaccaattaatgatgtttttgaagatcaaactaga |
47103619 |
T |
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| Q |
327 |
tttactttatcaccatccctttcttccacatctcttttatagtagtattatat |
379 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
47103618 |
tttactatttcaccatccctttcttccacatcacttttatagtagtactatat |
47103566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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