View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1529_low_14 (Length: 383)
Name: NF1529_low_14
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 36923382 - 36923730
Alignment:
| Q |
19 |
aactatattatagccatacctttgcaatgtatgttacattctccaacatattttgtaatttctattatttgtagacatatcttccaagtgaaacaccgac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36923382 |
aactatattatagccatacctttgcaatgtatgttacattctccatcatattttgtaatttctattatttgtagacatatcttccaagtgaaactccgac |
36923481 |
T |
|
| Q |
119 |
aacactacttaagtacagagaagaagagctagagactttaagaggtgatggaaaaggcaagcttgaaaagtgggatagggtttatgattatgcatgctac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923482 |
aacactacttaagtacagagaagaagagctagagactttaagaggtgatggaaaaggccagcttgaaaagtgggatagggtttatgattatgcatgctac |
36923581 |
T |
|
| Q |
219 |
aatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggcagag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923582 |
aatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggcagag |
36923681 |
T |
|
| Q |
319 |
aacctgccaaatcaggttaggcttctatatttgttgttttgttcttcat |
367 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36923682 |
aacctgccaaatcaggttaggcttctatttttgttgttttgttcttcat |
36923730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 47129223 - 47129164
Alignment:
| Q |
187 |
agtgggatagggtttatgattatgcatgctacaatgatttgggaaatcctgataaaggtc |
246 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||| ||||||| ||| ||||| |||| |
|
|
| T |
47129223 |
agtgggatagagtgtatgactatgcatgctacaatgacttgggaactccagataatggtc |
47129164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 311
Target Start/End: Complemental strand, 46711840 - 46711718
Alignment:
| Q |
189 |
tgggatagggtttatgattatgcatgctacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatc |
288 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||| || || |||||| ||||||||||||| |||||||| |
|
|
| T |
46711840 |
tgggacagggtttatgattatgcatactataatgatttggcggatcctgataaaggtccgaaatatgttcgtccagttcttggagggtccagtgaatatc |
46711741 |
T |
|
| Q |
289 |
cttaccctcgcaggggaagaact |
311 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46711740 |
cttaccctcgcaggggaagaact |
46711718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 338
Target Start/End: Original strand, 36744008 - 36744130
Alignment:
| Q |
216 |
tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca |
315 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| || | | ||||||| ||||| ||||| ||| || ||| ||| || ||||| ||||||||||| ||| |
|
|
| T |
36744008 |
tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgtaggggaagaacctgca |
36744107 |
T |
|
| Q |
316 |
gagaacctgccaaatcaggttag |
338 |
Q |
| |
|
|| |||| ||||| |||||||| |
|
|
| T |
36744108 |
gaaaaccgaccaaaacaggttag |
36744130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University