View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_16 (Length: 380)
Name: NF1529_low_16
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 134 - 365
Target Start/End: Original strand, 37237726 - 37237957
Alignment:
| Q |
134 |
cattcttgcagaacaggtttgtcttttgctattaagatgattatttgttagcttgttcacaaaaatatgagaatggacaaaaggtcaatgcttcctgtga |
233 |
Q |
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| T |
37237726 |
cattcttgcagaacaggtttgtcttttgctattaagatgattatttgttagcttgttcacaaaaatatgagaatggacaaaaggtcaatgcttcctgtga |
37237825 |
T |
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| Q |
234 |
gcttaaatttggttcaatataatcaggtattgctaagggttcagctgttggtatagctatggcaggaatatttggacttctattatttgttatctatata |
333 |
Q |
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| T |
37237826 |
gcttaaatttggttcaatataagcaggtattgctaagggttcagctgttggtatagctatggcaggaatatttggacttctattatttgttatctatata |
37237925 |
T |
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| Q |
334 |
tatgccaaatacttccaaaagaaggaggaaga |
365 |
Q |
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| T |
37237926 |
tatgccaaatacttccaaaagaaggaagaaga |
37237957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 37237609 - 37237693
Alignment:
| Q |
17 |
taggtaagtaacattgattatctcaattttcatttttgaatgatttatagaagaagtaaatattgcttcatataatttggttata |
101 |
Q |
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| T |
37237609 |
taggtaagtaacattgattatctcaattttcatttttgaatgatttatagaagaagtaaatattgcttcatataatttggttata |
37237693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 37309735 - 37309843
Alignment:
| Q |
257 |
caggtattgctaagggttcagctgttggtatagctatggcaggaatatttggacttctattatttgttatctatatatatgccaaatacttccaaaagaa |
356 |
Q |
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| T |
37309735 |
caggtcttgctaagggtgcaactgtgggtataataatagcaggaatatttggacttctattattagttatctatatatatgtcagatacttcaaaaagaa |
37309834 |
T |
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| Q |
357 |
ggaggaaga |
365 |
Q |
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| T |
37309835 |
ggaagaaga |
37309843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 33595785 - 33595737
Alignment:
| Q |
317 |
tatttgttatctatatatatgccaaatacttccaaaagaaggaggaaga |
365 |
Q |
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| T |
33595785 |
tatttgttatctatatatatgccaaatacttccaaaagaaggaagaaga |
33595737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 33596027 - 33595947
Alignment:
| Q |
17 |
taggtaagtaacattgattatctcaattttcatttttgaatgatttatagaagaagtaaatattgcttcatataatttggtt |
98 |
Q |
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| T |
33596027 |
taggtaagtaacattgattgtctcaatttggacttt-gagtgcattatataagaagtaaatattgcttcatataatttggtt |
33595947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 33595872 - 33595815
Alignment:
| Q |
186 |
ttgttcacaaaaatatgagaatggacaaaaggtcaatgcttcctgtgagcttaaattt |
243 |
Q |
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|||||||||||| |||| ||| ||| ||||||||||||||| ||||||||||||||| |
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| T |
33595872 |
ttgttcacaaaactatgcaaatagaccaaaggtcaatgcttcttgtgagcttaaattt |
33595815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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