View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1529_low_17 (Length: 365)

Name: NF1529_low_17
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1529_low_17
NF1529_low_17
[»] chr4 (13 HSPs)
chr4 (19-365)||(35334178-35334528)
chr4 (284-365)||(45994503-45994583)
chr4 (285-365)||(38766071-38766150)
chr4 (295-365)||(31307146-31307216)
chr4 (279-365)||(51853674-51853758)
chr4 (284-365)||(14854586-14854666)
chr4 (298-365)||(32005231-32005298)
chr4 (284-362)||(35972324-35972401)
chr4 (299-365)||(38844248-38844314)
chr4 (316-365)||(11140469-11140518)
chr4 (294-352)||(44741505-44741563)
chr4 (284-365)||(13686582-13686662)
chr4 (281-333)||(10199216-10199267)
[»] chr6 (8 HSPs)
chr6 (284-365)||(21910186-21910266)
chr6 (295-365)||(12411139-12411209)
chr6 (281-363)||(15614655-15614736)
chr6 (294-365)||(21029063-21029134)
chr6 (279-364)||(423631-423715)
chr6 (313-365)||(28099252-28099304)
chr6 (280-365)||(33792948-33793032)
chr6 (313-357)||(3237929-3237973)
[»] chr2 (22 HSPs)
chr2 (286-365)||(5394380-5394458)
chr2 (286-365)||(18105442-18105520)
chr2 (294-365)||(39401149-39401220)
chr2 (284-365)||(28365930-28366010)
chr2 (282-365)||(7157477-7157559)
chr2 (279-365)||(12133310-12133395)
chr2 (295-365)||(44732653-44732723)
chr2 (284-365)||(42745196-42745276)
chr2 (295-365)||(37568807-37568877)
chr2 (285-365)||(993736-993815)
chr2 (313-365)||(17658471-17658523)
chr2 (295-365)||(17981489-17981559)
chr2 (295-365)||(31579309-31579379)
chr2 (281-338)||(3772650-3772706)
chr2 (284-365)||(9438216-9438296)
chr2 (313-365)||(17627568-17627620)
chr2 (309-357)||(32643070-32643118)
chr2 (281-359)||(40688817-40688893)
chr2 (295-365)||(44752274-44752344)
chr2 (282-351)||(7020452-7020520)
chr2 (325-362)||(25988641-25988678)
chr2 (312-365)||(38463963-38464016)
[»] chr8 (11 HSPs)
chr8 (294-365)||(2743923-2743994)
chr8 (295-365)||(19715806-19715876)
chr8 (295-365)||(35206991-35207061)
chr8 (295-363)||(13468827-13468895)
chr8 (294-361)||(32422857-32422924)
chr8 (295-365)||(4125104-4125174)
chr8 (295-365)||(12958165-12958235)
chr8 (295-365)||(30935995-30936065)
chr8 (294-365)||(30056081-30056152)
chr8 (303-365)||(15682928-15682990)
chr8 (295-333)||(11363260-11363298)
[»] chr1 (11 HSPs)
chr1 (280-363)||(10840994-10841076)
chr1 (284-365)||(22022101-22022181)
chr1 (284-357)||(28724654-28724725)
chr1 (295-365)||(45806227-45806297)
chr1 (284-365)||(16756063-16756143)
chr1 (294-365)||(25655344-25655415)
chr1 (294-365)||(7624865-7624935)
chr1 (294-365)||(17600578-17600649)
chr1 (294-365)||(29124735-29124806)
chr1 (284-348)||(10750579-10750642)
chr1 (326-362)||(36806634-36806669)
[»] chr7 (15 HSPs)
chr7 (295-365)||(29059796-29059866)
chr7 (284-365)||(8839361-8839441)
chr7 (282-365)||(2657916-2657998)
chr7 (298-365)||(31492097-31492164)
chr7 (284-365)||(13254181-13254261)
chr7 (284-365)||(19477329-19477409)
chr7 (284-365)||(28537371-28537451)
chr7 (284-340)||(21747144-21747199)
chr7 (282-365)||(7190439-7190521)
chr7 (295-358)||(40099359-40099422)
chr7 (282-332)||(42741925-42741974)
chr7 (294-365)||(27484129-27484200)
chr7 (295-332)||(5905813-5905850)
chr7 (294-335)||(32469920-32469961)
chr7 (313-362)||(46373682-46373731)
[»] chr3 (10 HSPs)
chr3 (279-365)||(14352530-14352615)
chr3 (295-365)||(48204391-48204461)
chr3 (284-365)||(30996045-30996125)
chr3 (281-348)||(46604657-46604723)
chr3 (284-348)||(25224680-25224743)
chr3 (284-362)||(27763704-27763779)
chr3 (281-332)||(38331106-38331156)
chr3 (284-365)||(38088616-38088696)
chr3 (313-365)||(1386865-1386917)
chr3 (281-357)||(22288213-22288288)
[»] chr5 (6 HSPs)
chr5 (295-365)||(10591918-10591988)
chr5 (295-362)||(22188079-22188146)
chr5 (294-365)||(30785066-30785137)
chr5 (284-362)||(28023526-28023603)
chr5 (309-357)||(5681940-5681988)
chr5 (280-332)||(26607248-26607299)
[»] scaffold0182 (1 HSPs)
scaffold0182 (313-365)||(26340-26392)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 35334528 - 35334178
Alignment:
Q  19 tgaagggcatccttttattctctacaatgttgcgccccttgcgtttgaacccaaatgctctcattaagaagattagaattcaagaaattttggatttaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |    
T  35334528 tgaagggcatccttttattctctacaatgttgcgccccttgcgtttgaacctaaatgctctcattaagaaaattagaattcaagaaattttggatttata 35334429  T
Q  119 aagattgatgtcttttagtgataggggctttgtttccactttcataataatgacatcatgagtgtgtgatggatggtttttgtaagaatgcagcaat--- 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       
T  35334428 aagattgatgtcttttagtgataggagctttgtttccactttcataatagtgacatcatgagtgtgtgatggatggtttttgtaagaatgcagcaataaa 35334329  T
Q  216 -aaatgtttatcgtttttatttaatttggttactccaatttatgttattcaagaagtaagaatgaatatccaagagcgctttagatgagatggaacaagt 314  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35334328 aaaatgtttatcgtttttatttaatttgtttactccaatttatgttattcaagaagtaagaatgaatatccaagagcgctttagatgagatggaacaagt 35334229  T
Q  315 ctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||| |||||||||| | || | |||| |||||||||||||||||||    
T  35334228 ctcttctagcttaaccaaggttcttggttcgtattcagccttgggcatgca 35334178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 45994503 - 45994583
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  45994503 ccaagagcg-tttagatgagatggaacaggtctcttctagcttaaccaaggtcctggattcgaatccagccttgggcatgca 45994583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 365
Target Start/End: Original strand, 38766071 - 38766150
Alignment:
Q  285 caagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||| || |||| ||||||||||||||||    
T  38766071 caagagcgctt-agatgagatggaacgagtctcttctagcttaaccaaggtcctgggtttgaatccagccttgggcatgca 38766150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 31307216 - 31307146
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||  |||||||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  31307216 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 31307146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 51853674 - 51853758
Alignment:
Q  279 aatatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||| |||||||||||| ||||||||| |||  |||||||||||||||||||||  | |||| ||||||||||||||||||||||||    
T  51853674 aatacccaagagcgctt-agatgagatagaatgagtctcttctaacttaaccaaagttctgg-ttcgaattcagccttgggcatgca 51853758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 14854586 - 14854666
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| ||||||||||||||   ||||||||| |||||||||| | |||| ||||||| ||||||||||||||||    
T  14854586 ccaagagcgctt-agatgagatggaacggttctcttctagcttaaccaaggttctgggttcgaatccagccttgggcatgca 14854666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 32005298 - 32005231
Alignment:
Q  298 gatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| | ||||||||||||||||||||  |||||  |||||||||||| |||||||||||    
T  32005298 gatgagatggaataggtctcttctaacttaaccaaagtcctgagttcgaattcagctttgggcatgca 32005231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 35972324 - 35972401
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcat 362  Q
    |||||||||||| ||||||||||||||  | |||||||| |||||||||| || ||| ||||||| ||||| |||||||    
T  35972324 ccaagagcgctt-agatgagatggaacgggcctcttctagcttaaccaaggtcttgggttcgaatccagccatgggcat 35972401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 38844314 - 38844248
Alignment:
Q  299 atgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| ||||||||||| |||||||||| || ||  ||||||| |||| |||||||||||    
T  38844314 atgagatggaacgagtctcttctagcttaaccaaggtcatgagttcgaatccagctttgggcatgca 38844248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 11140469 - 11140518
Alignment:
Q  316 tcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  11140469 tcttctagcttaaccaaggtcctggtttcgaatccagccttgggcatgca 11140518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 44741563 - 44741505
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcag 352  Q
    |||||||||||||   |||||||||||||||||||  |||||  |||||||||||||||    
T  44741563 tttagatgagatgacgcaagtctcttctaacttaattaagattttggattcgaattcag 44741505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 13686582 - 13686662
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| ||||||||||| |   |||||||||  |||||||||| |||||| ||||||| || |||||||| ||||    
T  13686582 ccaagagcgctt-agatgagatggcatgggtctcttcttgcttaaccaaggtcctgggttcgaatccatccttgggcgtgca 13686662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 10199267 - 10199216
Alignment:
Q  281 tatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaag 333  Q
    |||||||||| |||| ||||||||||||||  ||||||| |||||||||||||    
T  10199267 tatccaagagtgctt-agatgagatggaacgggtctcttataacttaaccaag 10199216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 21910186 - 21910266
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  21910186 ccaagagcg-tttagatgagatgaaacaagtctcttctagcttaaccaagatcctgggttcgaatccagccttgggcatgca 21910266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 12411139 - 12411209
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||  ||||||| ||||||||||||||||    
T  12411139 ttagatgagatggaacaggtctcttctaacttaaccaaggtcctgagttcgaatccagccttgggcatgca 12411209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 15614736 - 15614655
Alignment:
Q  281 tatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatg 363  Q
    ||||||||||||||| | |||||||||||| |||||||||||||||||||||  || ||| ||||||||||| ||||| ||||    
T  15614736 tatccaagagcgctt-atatgagatggaacgagtctcttctaacttaaccaatgtcatgggttcgaattcagtcttggacatg 15614655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 21029134 - 21029063
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||| ||||||||| ||  |||||||||| |||||||||| || ||| ||||||| ||||||||||||||||    
T  21029134 tttatatgagatggcacgggtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgca 21029063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 423631 - 423715
Alignment:
Q  279 aatatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgc 364  Q
    ||||| ||||||||||| |||||||||||||||  |||||||||  ||||||||| |  ||| || |||| |||||||||||||||    
T  423631 aatattcaagagcgctt-agatgagatggaacagatctcttctagtttaaccaaggttttgggtttgaatccagccttgggcatgc 423715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 28099252 - 28099304
Alignment:
Q  313 gtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||| |||||| ||| |||||| ||||||| ||||||||||||||||    
T  28099252 gtctcttctaccttaactaaggtcctgggttcgaatccagccttgggcatgca 28099304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 33792948 - 33793032
Alignment:
Q  280 atatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||| |||||||||| | ||||||||  | ||||||||| || ||||| ||||||||||  ||| |||||||||||| |||||||    
T  33792948 atatctaagagcgcttaa-atgagatgacaaaagtctcttttagcttaatcaagatcctgagttcaaattcagccttgcgcatgca 33793032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 3237929 - 3237973
Alignment:
Q  313 gtctcttctaacttaaccaagatcctggattcgaattcagccttg 357  Q
    ||||||||||| |||||||||||||| | ||||||| ||||||||    
T  3237929 gtctcttctaatttaaccaagatccttggttcgaatccagccttg 3237973  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 286 - 365
Target Start/End: Original strand, 5394380 - 5394458
Alignment:
Q  286 aagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||| |||||||||||||| ||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  5394380 aagagcgctt-agatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 5394458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 18105520 - 18105442
Alignment:
Q  286 aagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||| | |||||||||||| ||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  18105520 aagagcgctt-atatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 18105442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 39401220 - 39401149
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||  || ||||| || |||||||||||||||| ||||||||||||||||||||||||||||    
T  39401220 tttagatgagatgacacgagtcttttttaacttaaccaagatcttggattcgaattcagccttgggcatgca 39401149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 28365930 - 28366010
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||||| || ||  ||||||| ||||||||||||||||    
T  28365930 ccaagagcgctt-agatgagatggaacgcgtctcttctaacttaaccaaggtcgtgagttcgaatgcagccttgggcatgca 28366010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 7157477 - 7157559
Alignment:
Q  282 atccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||| ||||||| ||||| ||| |||| ||||||||||||||||||||||||||| | |||||||  |||||||||||||||    
T  7157477 atccaatagcgctt-agatgggatagaacgagtctcttctaacttaaccaagatcctaggttcgaatctagccttgggcatgca 7157559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 12133395 - 12133310
Alignment:
Q  279 aatatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||| |||||||||||| |||||||||||||| ||||||||||| ||||| |||| || ||| ||||||| ||||||||| ||||||    
T  12133395 aatacccaagagcgctt-agatgagatggaacgagtctcttctagcttaatcaaggtcatgggttcgaatccagccttggacatgca 12133310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 44732723 - 44732653
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||  ||||||| || |||||||||| |||||| ||||||| ||||||||||||||||    
T  44732723 ttagatgagatggaacgggtctcttatagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 44732653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 42745276 - 42745196
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| ||||||||||||||  ||||||| || |||||||||| || ||| ||||||| ||||||||||||||||    
T  42745276 ccaagagcgctt-agatgagatggaacgggtctcttatagcttaaccaaggtcttgggttcgaatccagccttgggcatgca 42745196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 37568877 - 37568807
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||  || ||||||| |||||||||| |||||| ||||||| ||||||| ||||||||    
T  37568877 ttagatgagatggaacgggtttcttctagcttaaccaaggtcctgggttcgaatccagccttaggcatgca 37568807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 365
Target Start/End: Original strand, 993736 - 993815
Alignment:
Q  285 caagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||| ||||||||||  ||  ||||||| || |||||||||| |||||| |||||||||| |||||||||||||    
T  993736 caagagcgctt-agatgagatgacacgtgtctcttatagcttaaccaaggtcctgggttcgaattcaaccttgggcatgca 993815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 17658471 - 17658523
Alignment:
Q  313 gtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||| ||||||||||||||| ||||||||  |||||||||||||||    
T  17658471 gtctcttctaatttaaccaagatcctgaattcgaatctagccttgggcatgca 17658523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 17981489 - 17981559
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||||| ||||||||||| |||||||||  ||||| |||  ||| ||| ||||||||||||    
T  17981489 ttagatgagatggaacgagtctcttctagcttaaccaaagtcctgaatttaaatccagtcttgggcatgca 17981559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 31579379 - 31579309
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| |||  |||||||||| ||||| |||| || ||| ||||||| ||||||||||||||||    
T  31579379 ttagatgagatgtaacgggtctcttctagcttaatcaaggtcttgggttcgaatccagccttgggcatgca 31579309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 3772706 - 3772650
Alignment:
Q  281 tatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcct 338  Q
    ||||||||||||||| ||||||||||  ||||||||||||||| ||||||||| ||||    
T  3772706 tatccaagagcgctt-agatgagatgacacaagtctcttctaatttaaccaaggtcct 3772650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 9438296 - 9438216
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||| ||||||||||||||||| | |||||| || |||||||||  || | | ||||||| ||||||||||||||||    
T  9438296 ccaagagcg-tttagatgagatggaacgaatctcttttagcttaaccaaagtctttggttcgaatccagccttgggcatgca 9438216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 17627568 - 17627620
Alignment:
Q  313 gtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||| ||||||||| |||||  ||||||| ||||||||||||||||    
T  17627568 gtctcttctaatttaaccaaggtcctgagttcgaatccagccttgggcatgca 17627620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 32643118 - 32643070
Alignment:
Q  309 acaagtctcttctaacttaaccaagatcctggattcgaattcagccttg 357  Q
    |||| ||||||||||||||| |||||||||| |||||||| ||||||||    
T  32643118 acaaatctcttctaacttaaacaagatcctgaattcgaatccagccttg 32643070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 359
Target Start/End: Complemental strand, 40688893 - 40688817
Alignment:
Q  281 tatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttggg 359  Q
    |||| |||||||||| || ||||||||||   ||||||||||||||||||||  |||| || |||||||||||||||||    
T  40688893 tatctaagagcgctt-aggtgagatggaattggtctcttctaacttaaccaaagtcct-gagtcgaattcagccttggg 40688817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 44752344 - 44752274
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||  |||||||||||||| |||||||||  |||| | |||||||  || ||||||||||||    
T  44752344 ttagatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatcaagtcttgggcatgca 44752274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 7020520 - 7020452
Alignment:
Q  282 atccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattca 351  Q
    ||||||||||| |||||||||||| | ||  |||||||||| |||||||||| || || |||||||||||    
T  7020520 atccaagagcg-tttagatgagattgcacgggtctcttctagcttaaccaaggtcttgaattcgaattca 7020452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 25988641 - 25988678
Alignment:
Q  325 ttaaccaagatcctggattcgaattcagccttgggcat 362  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  25988641 ttaaccaagattctgggttcgaattcagccttgggcat 25988678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 38463963 - 38464016
Alignment:
Q  312 agtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||| |||||||||||||||  | || ||||||||| ||||||||||||||||    
T  38463963 agtcttttctaacttaaccaaagttctagattcgaatccagccttgggcatgca 38464016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 294 - 365
Target Start/End: Original strand, 2743923 - 2743994
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||||||  |||||||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  2743923 tttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 2743994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 19715876 - 19715806
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||| |||| ||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  19715876 ttagatgagatggaacatgtcttttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 19715806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 35206991 - 35207061
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| |||| ||||||||||||||||||||||| |||| |||||||| | |||||| ||||||    
T  35206991 ttagatgagatgaaacaggtctcttctaacttaaccaagattctgggttcgaatttaaccttggacatgca 35207061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 13468895 - 13468827
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatg 363  Q
    |||||| |||||||||  |||||||||| |||||||||| |||||| ||||||| ||||||||||||||    
T  13468895 ttagattagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatg 13468827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 32422924 - 32422857
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggca 361  Q
    |||||||||||||  |||||||||||| | |||||||||||||||||| |||||||||  ||||||||    
T  32422924 tttagatgagatgacacaagtctcttcaaccttaaccaagatcctggaatcgaattcaatcttgggca 32422857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 4125174 - 4125104
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||  |||||||||| |||||||||  |||||| |||||||  |||||||||||||||    
T  4125174 ttagatgagatggaacgggtctcttctagcttaaccaatgtcctgggttcgaatcaagccttgggcatgca 4125104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 12958235 - 12958165
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||||| ||||||||||| |||||||||| || ||| || |||| |||| |||||||||||    
T  12958235 ttagatgagatggaactagtctcttctagcttaaccaaggtcatgggtttgaatccagcattgggcatgca 12958165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 30935995 - 30936065
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||  ||||||| |||||||  |||||||    
T  30935995 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagccttaagcatgca 30936065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 30056152 - 30056081
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||||||| |||||||||| |||||| ||| || ||| ||| ||| ||||||| ||||||||    
T  30056152 tttagatgagatggaacatgtctcttctagcttaacgaaggtcatgggttcaaatccagccttaggcatgca 30056081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 15682928 - 15682990
Alignment:
Q  303 gatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||| ||||||||||| ||||| |||| |||||  ||||||| ||||||||||||||||    
T  15682928 gatggaacgagtctcttctagcttaatcaaggtcctgagttcgaatccagccttgggcatgca 15682990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 11363260 - 11363298
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaag 333  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  11363260 ttagatgagatgaaacaaatctcttctaacttaaccaag 11363298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 10840994 - 10841076
Alignment:
Q  280 atatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatg 363  Q
    |||||||||||||||| |||||||||| |||| |||||||||| ||||||||||||  ||| ||| ||||||||||||||||||    
T  10840994 atatccaagagcgctt-agatgagatgaaacaggtctcttctatcttaaccaagattttgggttcaaattcagccttgggcatg 10841076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 22022101 - 22022181
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||| ||| |  ||| ||||||| ||||||||||||||||    
T  22022101 ccaagagcg-tttagatgagatggaacaggtctcttctagcttaactaaggttgtgggttcgaatccagccttgggcatgca 22022181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 28724654 - 28724725
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttg 357  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||  ||| |||||||||||||||||||||||    
T  28724654 ccaagagcgctt-agatgagatggaacgagtctcttctagcttaataaag-tcctggattcgaattcagccttg 28724725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 45806227 - 45806297
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||| ||||  |||||||||| |||||||||| |||||  ||||||||||| ||||||||||||    
T  45806227 ttagatgagatagaacgggtctcttctatcttaaccaaggtcctgagttcgaattcagtcttgggcatgca 45806297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 16756063 - 16756143
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| ||||||||||||||   ||||||||| |||||||||| | |||| || ||||||||| |||||||||||    
T  16756063 ccaagagcgctt-agatgagatggaacggatctcttctagcttaaccaaggttctgggtttgaattcagcattgggcatgca 16756143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 25655415 - 25655344
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||||| | ||||||||||||| |||| | |||| |||||||| | | |||||||||||    
T  25655415 tttagatgagatggaacaaatatcttctaacttaatcaaggttctgggttcgaatttaacattgggcatgca 25655344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 365
Target Start/End: Original strand, 7624865 - 7624935
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||| |||||||||||||||||| ||||| ||||||||||||  ||| ||| ||| ||||||||| ||||||    
T  7624865 tttaaatgagatggaacaagtct-ttctagcttaaccaagattatgggttcaaatccagccttggacatgca 7624935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 17600649 - 17600578
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||  ||  |||||||||| |||||||||| || ||| || ||||||||||||| |||||||    
T  17600649 tttagatgagatgacacgggtctcttctagcttaaccaaggtcttgggttagaattcagccttgagcatgca 17600578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 365
Target Start/End: Original strand, 29124735 - 29124806
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||| ||| ||||||||||| |||||||| | || ||  ||||||| |||| |||||||||||    
T  29124735 tttagatgagatgaaacgagtctcttctagcttaaccagggtcatgagttcgaatccagcattgggcatgca 29124806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 10750579 - 10750642
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaat 348  Q
    |||||||||||| |||||||||| |||| |||| |||||| ||||||||| || ||| |||||||    
T  10750579 ccaagagcgctt-agatgagatgaaacatgtcttttctaatttaaccaaggtcttgggttcgaat 10750642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 36806634 - 36806669
Alignment:
Q  326 taaccaagatcctggattcgaattcagccttgggcat 362  Q
    |||||||||||||| ||||||||||||||||||||||    
T  36806634 taaccaagatcctg-attcgaattcagccttgggcat 36806669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 29059796 - 29059866
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||  |||||||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  29059796 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 29059866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 8839441 - 8839361
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| |||||||||| |||  |||||||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  8839441 ccaagagcgctt-agatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 8839361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 2657998 - 2657916
Alignment:
Q  282 atccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| ||||  ||||  ||| ||| ||||||||||||||||    
T  2657998 atccaagagcgctt-agatgagatggaacgagtctcttctaacttaatcaaggccctgagttcaaatacagccttgggcatgca 2657916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 31492097 - 31492164
Alignment:
Q  298 gatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||  |||||||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  31492097 gatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 31492164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 13254261 - 13254181
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| ||||||||||||||  |||||||||| |||||||||| |||||  ||||||| ||||||| ||||||||    
T  13254261 ccaagagcgctt-agatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgca 13254181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 19477409 - 19477329
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||| |||||||||||||||||  |||||||||| |||||||||| | |||| || |||| ||||||||||||||||    
T  19477409 ccaagagcg-tttagatgagatggaacgggtctcttctagcttaaccaaggttctgggtttgaatccagccttgggcatgca 19477329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 28537371 - 28537451
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| ||||||||||||||  |||||||||||||||| |||| |  ||| ||||||| ||||||||||||||||    
T  28537371 ccaagagcgctt-agatgagatggaacgggtctcttctaacttaatcaaggttttgggttcgaatccagccttgggcatgca 28537451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 21747199 - 21747144
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctgg 340  Q
    ||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||    
T  21747199 ccaagagcg-tttagatgagatggaacgggtctcttctaacttaaccaaggtcctgg 21747144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 7190521 - 7190439
Alignment:
Q  282 atccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||| |||||||||||||||| || ||||||||| |||||||||| |  ||  || ||||||||| |||||||||||    
T  7190521 atccaagagcg-tttagatgagatggaataaatctcttctagcttaaccaaggttatgagtttgaattcagcattgggcatgca 7190439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 40099422 - 40099359
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgg 358  Q
    ||||||||||||||||  |||||||||| |||||| ||||||||| |||||||| |||| ||||    
T  40099422 ttagatgagatggaacgggtctcttctagcttaactaagatcctgaattcgaatccagctttgg 40099359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 42741974 - 42741925
Alignment:
Q  282 atccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaa 332  Q
    ||||||||||| |||||||||||||||||| |||||||||| |||||||||    
T  42741974 atccaagagcg-tttagatgagatggaacaggtctcttctatcttaaccaa 42741925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 27484200 - 27484129
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||  ||  ||| ||||| ||||||||||    
T  27484200 tttagatgagatgacacaagtctcttctagcttaaccaaggtcctgagtttaaatccagccatgggcatgca 27484129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 5905813 - 5905850
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaa 332  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  5905813 ttagatgagatagaacgagtctcttctaacttaaccaa 5905850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 32469920 - 32469961
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagat 335  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||    
T  32469920 tttagatgagatggaacgagtctcttctagcttaatcaagat 32469961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 46373682 - 46373731
Alignment:
Q  313 gtctcttctaacttaaccaagatcctggattcgaattcagccttgggcat 362  Q
    |||||||||| ||||| ||||||||||| ||||||| ||| |||||||||    
T  46373682 gtctcttctagcttaagcaagatcctgggttcgaatccagtcttgggcat 46373731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 14352530 - 14352615
Alignment:
Q  279 aatatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||  | | ||||||| ||||||||| ||||||    
T  14352530 aatacccaagagcgctt-agatgagatggaacaagtctcttctagcttaaccaagatattcggttcgaatccagccttggacatgca 14352615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 48204461 - 48204391
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||||| ||||||||||| |||||||||| || ||| ||||||| ||||||||||||||||    
T  48204461 ttagatgagatggaacgagtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgca 48204391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 30996125 - 30996045
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| ||||||||||||||  |||||||||| |||||||||| |||||| ||||||| |  |||||||||||||    
T  30996125 ccaagagcgctt-agatgagatggaacgggtctcttctatcttaaccaaggtcctgggttcgaatccgaccttgggcatgca 30996045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 46604723 - 46604657
Alignment:
Q  281 tatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaat 348  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||||||||| | |||| |||||||    
T  46604723 tatccaagagcgctt-agatgagatggaacgagtctcttataacttaaccaaggttctgggttcgaat 46604657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 25224680 - 25224743
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaat 348  Q
    |||||||||||| |||||||||| |||  |||||||||| |||||||||| |||||| |||||||    
T  25224680 ccaagagcgctt-agatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaat 25224743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 27763704 - 27763779
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcat 362  Q
    |||||||||||| ||||||||| ||||  |||||  ||| |||||||||| |||||| ||||||| |||||||||||||    
T  27763704 ccaagagcgctt-agatgagatagaacgggtctc--ctagcttaaccaaggtcctgggttcgaatccagccttgggcat 27763779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 38331106 - 38331156
Alignment:
Q  281 tatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaa 332  Q
    ||||||||||||||| |||||||||||| |  ||||||||||||||||||||    
T  38331106 tatccaagagcgctt-agatgagatggatcgggtctcttctaacttaaccaa 38331156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 38088616 - 38088696
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||| |||||||||| |||  |||||||||| |||||||||| | |  | ||||||| |||| |||||||||||    
T  38088616 ccaagagcgctt-agatgagatgaaacgggtctcttctagcttaaccaaggttccaggttcgaatccagctttgggcatgca 38088696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 1386865 - 1386917
Alignment:
Q  313 gtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    |||||||||||||||| |||| || || |||||||||||| ||| ||||||||    
T  1386865 gtctcttctaacttaatcaaggtcttgaattcgaattcagtcttaggcatgca 1386917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 22288213 - 22288288
Alignment:
Q  281 tatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttg 357  Q
    ||||||| ||||||| ||||||||||  |  | |||||||||||||||||||  |||||  ||||||||||||||||    
T  22288213 tatccaaaagcgctt-agatgagatgacatgaatctcttctaacttaaccaaagtcctgagttcgaattcagccttg 22288288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 10591918 - 10591988
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||  ||||||||||  ||||||||| |||||| ||||||| ||||||||||||||||    
T  10591918 ttagatgagatggaacgggtctcttctagattaaccaaggtcctgggttcgaatccagccttgggcatgca 10591988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 22188146 - 22188079
Alignment:
Q  295 ttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcat 362  Q
    ||||||||||| |||| | |||||||||||||||||||| |  ||| || |||| |||||||||||||    
T  22188146 ttagatgagattgaacgaatctcttctaacttaaccaaggtattgggtttgaatccagccttgggcat 22188079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 30785137 - 30785066
Alignment:
Q  294 tttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
    ||||||||||||||||| ||||||||||| ||||| |||  || ||| ||||||| |||| |||| ||||||    
T  30785137 tttagatgagatggaacgagtctcttctagcttaatcaatgtcttgggttcgaatccagctttggacatgca 30785066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 28023603 - 28023526
Alignment:
Q  284 ccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaagatcctggattcgaattcagccttgggcat 362  Q
    |||||||||||| ||||||||||||||   ||||||||| |||||||||  |||||  ||||||| ||||||| |||||    
T  28023603 ccaagagcgctt-agatgagatggaacggatctcttctagcttaaccaatgtcctgagttcgaatccagccttaggcat 28023526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 5681940 - 5681988
Alignment:
Q  309 acaagtctcttctaacttaaccaagatcctggattcgaattcagccttg 357  Q
    ||||||||||| ||||| || |||||| || ||||||||||||||||||    
T  5681940 acaagtctcttttaactaaatcaagattctagattcgaattcagccttg 5681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 26607299 - 26607248
Alignment:
Q  280 atatccaagagcgctttagatgagatggaacaagtctcttctaacttaaccaa 332  Q
    ||||||||||||| |||| ||||||||  |||||||| |||||||||||||||    
T  26607299 atatccaagagcg-tttaaatgagatgacacaagtctattctaacttaaccaa 26607248  T

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Target: scaffold0182 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 26340 - 26392
Alignment:
Q  313 gtctcttctaacttaaccaagatcctggattcgaattcagccttgggcatgca 365  Q
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T  26340 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 26392  T

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