View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_2 (Length: 804)
Name: NF1529_low_2
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 1 - 790
Target Start/End: Original strand, 53728283 - 53729073
Alignment:
| Q |
1 |
tggattgtgaaaattggtgatggtgaaatggaagcggattgcggataaaggtggaaagtgtcacctcgatatattagaagatttgtgcattactcagtgt |
100 |
Q |
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| T |
53728283 |
tggattttgaaaattggtgatggtgaaatggaagcggattgcagataaaggtggaaagtgtcacctcgatatattagaagatttgtgcattactcagtgt |
53728382 |
T |
|
| Q |
101 |
gataatcctttacagtctttatggaaaatgatcttgccaatcaaagcatatgtgaggaaaaagcaattccttgctccaactcttgattgcgttgaacaaa |
200 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53728383 |
gataatcctttaccgtctttatggtaaatgatcttgccaatcaaagcatatttgaggaaaaagcaattccttgctccaactcttgattgcgttgaacaaa |
53728482 |
T |
|
| Q |
201 |
tcaatgactatgttttgcctctgataaaaggtgatgaacaacaatatctaagctctcatacccccttgtaaatatgatgttttgcctttgataaaaggtg |
300 |
Q |
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| T |
53728483 |
tcaatgactatgttttgcctttgataaaaggtgatgaaaaacaatatctaagctctcatacccccttgtaaatatgatgttttgcctttgataaaaggtg |
53728582 |
T |
|
| Q |
301 |
atgaaaacaatatctaagttctgataccccttgcaaatatgatgaggattatgacattcaaggtgattggtttattttcgagtttctaaatgataaatat |
400 |
Q |
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| T |
53728583 |
atgaaaacaatatctaagttctgataccccttgcaaatatgatgaggattatgacattcaaggtgattggtttatttccgagtttctaaatgataaatat |
53728682 |
T |
|
| Q |
401 |
tctggtatagcaaaccatcatttgtatttcaaggttggtgtgcctattatgttaaaaaatattgatcaagtgaatggtttatgtaatgggacaagtttgc |
500 |
Q |
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| T |
53728683 |
tctggtatagcaaaccatcatttgtatttcaaggttggtgtgcctattatgttaaaaaatattgatcaagtgaatggtttatgtaatgggacaagtttgc |
53728782 |
T |
|
| Q |
501 |
aagtatctcaccttnnnnnnntgtcattactgctactgacattacaagcaagggaattgatcaaaggatcttaattcaagagatggatttggttctctct |
600 |
Q |
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| T |
53728783 |
aagtatctcaccttaaaaaaatgtcattactgctactgacattacaagcaagggtattgatcaaaggatcttaattcaagagatggatttggttctctct |
53728882 |
T |
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| Q |
601 |
cattctggatttccattcaaatgttcaagacaatttcctatctcactgtattttgctacgacgataaacaaaaatcaaggtcagccattgtctaaggtag |
700 |
Q |
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| T |
53728883 |
cattctggatttccattcaaatgttcaagacaatttcctatctcactgtattttgctacgacgataaacaaaaatcaaggtcagccattgtctaaggtag |
53728982 |
T |
|
| Q |
701 |
ggttgtatctacctcggcaagtgtttacatatagacaactat-tgttgctatttccaaagtaaccactaaaatatgattaaaattgttgat |
790 |
Q |
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| T |
53728983 |
ggttgtatctacctcggcaagtgtttacacatagacaactatatgttgctgtgtccaaagtaaccactaaaatatgattaaaattgttgat |
53729073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 1559541 - 1559475
Alignment:
| Q |
305 |
aaacaatatctaagttctgataccccttgcaaatatgatgaggattatgacattcaaggtgattggt |
371 |
Q |
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| T |
1559541 |
aaacattatctcagttctgatacaccttgcaaatctgatgaggattatgatattcaaggagattggt |
1559475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 602 - 716
Target Start/End: Original strand, 23373715 - 23373832
Alignment:
| Q |
602 |
attctggatttccattcaaatgttcaaga---caatttcctatctcactgtattttgctacgacgataaacaaaaatcaaggtcagccattgtctaaggt |
698 |
Q |
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|||| |||||||||||||||| ||||||| |||||||| || ||| ||| ||||| | ||| |||||||| | |||||| || ||||||||||||| |
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| T |
23373715 |
attcaggatttccattcaaattttcaagaagacaatttccgatttcattgtgctttgcaatgaccataaacaagagtcaaggacaatcattgtctaaggt |
23373814 |
T |
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| Q |
699 |
agggttgtatctacctcg |
716 |
Q |
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| T |
23373815 |
tggattgtatctacctcg |
23373832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 279
Target Start/End: Original strand, 49088811 - 49088935
Alignment:
| Q |
153 |
tgaggaaaaagcaattccttgctccaactcttgattgcgttgaacaaatcaatgactatgttttgcctctgataaaaggtgatgaacaacaatatctaag |
252 |
Q |
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| T |
49088811 |
tgaggaaaaagcaat-cgttgctccaactcttgattatgatgaacaagttaatgattatgttttgtcaatgataaaaggagaagaaaaacaatatttaag |
49088909 |
T |
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| Q |
253 |
ctctcatacccccttgtaaatatgatg |
279 |
Q |
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|| | ||| | |||||||||| ||||| |
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| T |
49088910 |
ctataata-ctccttgtaaatctgatg |
49088935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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