View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_21 (Length: 325)
Name: NF1529_low_21
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 75 - 306
Target Start/End: Original strand, 6744701 - 6744932
Alignment:
| Q |
75 |
atttattaacacatgtttcatttttgttgataattcttgattttcttacaatttggtacactaattttgtcatggcgatttttggcagctgatgcagagg |
174 |
Q |
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| T |
6744701 |
atttatttacacatgtttcatttttgttgataattcttgattttcttacaatttggtacactaattttgtcatggcgatttttggcagctgatgcagagg |
6744800 |
T |
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| Q |
175 |
agtttggggtggcattttgattgtttattcttattcatgtatcatgtagttttattttgattctaatagtaaaagtcagcttctgtttttgtgtcatctt |
274 |
Q |
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| T |
6744801 |
agtttggggtggcattttgattgtttattcttattcatgtatcatgtagttttattttgattctaatagtaaaagtcagcttctgtttttgtgtcatctt |
6744900 |
T |
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| Q |
275 |
tttctttctattatttaacaagcgcatgtgat |
306 |
Q |
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| T |
6744901 |
tttctttctattatttaacaagcgcatgtgat |
6744932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 75 - 308
Target Start/End: Original strand, 4434100 - 4434336
Alignment:
| Q |
75 |
atttattaacacatgtttcatttttgttgataattcttgattttcttacaatttggtacactaattttgtcatggcgatttttggcagctgatgcagagg |
174 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4434100 |
atttatttacacatgtttcatttttgttgataattcttgattttcttacaatttggtacactaattttgtcatggcgatttttggcagctgatgcagagg |
4434199 |
T |
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| Q |
175 |
agtttggggtggcattttgattgtttattcttattcatgtatcatgtagttttattttgattctaatagtaaaagtcagcttctgtttttgtgtcatctt |
274 |
Q |
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| T |
4434200 |
agtttggggtgacattttgattgtttattcttattcatgtatcatgtagttttattttgattctaatagtaaaagtcagcttctgtttttgtgtcatctt |
4434299 |
T |
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| Q |
275 |
tttctttctat---tatttaacaagcgcatgtgatac |
308 |
Q |
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| T |
4434300 |
tttctttctattaatatttaacaagcgcatgtgatac |
4434336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 91 - 306
Target Start/End: Original strand, 9489377 - 9489584
Alignment:
| Q |
91 |
ttcatttttgttgataattcttgattttcttacaatttggtacactaattttgtcatggcgatttttggcagctgatgcagaggagtttggggtggcatt |
190 |
Q |
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| T |
9489377 |
ttcatttttgttgataattcttgattttcttaca--------cactgattttgtcatggtgatttttggcagctgatgcagaggagtttggggtggcatt |
9489468 |
T |
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| Q |
191 |
ttgattgtttattcttattcatgtatcatgtagttttattttgattctaatagtaaaagtcagcttctgtttttgtgtcatctttttctttctattattt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9489469 |
ttgattgtttattcttattcatgtatcatgtagttttattttgattctaatagtaaaagtcagcttctgtttttgtgtcatctttttctttctattattt |
9489568 |
T |
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| Q |
291 |
aacaagcgcatgtgat |
306 |
Q |
| |
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|||||||||||||||| |
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| T |
9489569 |
aacaagcgcatgtgat |
9489584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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