View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_24 (Length: 319)
Name: NF1529_low_24
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 45273547 - 45273839
Alignment:
| Q |
11 |
gaagcaaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcg |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273547 |
gaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcg |
45273646 |
T |
|
| Q |
111 |
gccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgttggcatactctgcatagtaacatgtgttgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45273647 |
gccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgcatagtaacatgtgttgt |
45273746 |
T |
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| Q |
211 |
gattttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaatacttcc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273747 |
gattttgttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaatacttcc |
45273839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 45281791 - 45282083
Alignment:
| Q |
11 |
gaagcaaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcg |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45281791 |
gaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcg |
45281890 |
T |
|
| Q |
111 |
gccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgttggcatactctgcatagtaacatgtgttgt |
210 |
Q |
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| T |
45281891 |
gccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgcatagtaacatgtgttgt |
45281990 |
T |
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| Q |
211 |
gattttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaatacttcc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45281991 |
gattttgttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaatacttcc |
45282083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 45293131 - 45293416
Alignment:
| Q |
11 |
gaagcaaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcg |
110 |
Q |
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||||| |||||| | |||||||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||||| |||||||| |
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| T |
45293131 |
gaagccaaggtaattaggaacattaagaccagtcaaccattcggctgcggacttgggtccagcttggagccataaaccagcagtgaatttggtagcctcg |
45293230 |
T |
|
| Q |
111 |
gccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgttggcatactctgcatagtaacatgtgttgt |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||||||| | |
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| T |
45293231 |
gccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattggcaccaggtccagtgttggcgtactctgcatagtaacatgtgtttt |
45293330 |
T |
|
| Q |
211 |
gattttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaa |
296 |
Q |
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| ||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45293331 |
caaaatgttctccttgccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgctaaa |
45293416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 45302091 - 45302376
Alignment:
| Q |
11 |
gaagcaaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcg |
110 |
Q |
| |
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||||| |||||| | |||||||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||||| |||||||| |
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| T |
45302091 |
gaagccaaggtaattaggaacattaagaccagtcaaccattcggctgcggacttgggtccagcttggagccataaaccagcagtgaatttggtagcctcg |
45302190 |
T |
|
| Q |
111 |
gccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgttggcatactctgcatagtaacatgtgttgt |
210 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||||||| | |
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| T |
45302191 |
gccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattggcaccaggtccagtgttggcgtactctgcatagtaacatgtgtttt |
45302290 |
T |
|
| Q |
211 |
gattttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaa |
296 |
Q |
| |
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| ||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45302291 |
caaaatgttctccttgccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgctaaa |
45302376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 45269985 - 45270194
Alignment:
| Q |
11 |
gaagcaaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagccatataccagctgtgaat |
98 |
Q |
| |
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||||| |||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||| | ||||||||||| || ||| || |
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| T |
45269985 |
gaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtat |
45270084 |
T |
|
| Q |
99 |
ttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgttggcatactctgcatagt |
198 |
Q |
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||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
45270085 |
ttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagt |
45270184 |
T |
|
| Q |
199 |
aacatgtgtt |
208 |
Q |
| |
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|||| ||||| |
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| T |
45270185 |
aacacgtgtt |
45270194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 45270217 - 45270283
Alignment:
| Q |
213 |
ttttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatga |
279 |
Q |
| |
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||||||||| || ||||| |||||||||||||| |||||| ||||||||||| ||||||||||||| |
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| T |
45270217 |
ttttgttcttctggccaagtggtccatccatcttgatgaataaaatcaccaattgtggattccatga |
45270283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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