View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1529_low_26 (Length: 312)
Name: NF1529_low_26
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 5568662 - 5568944
Alignment:
| Q |
16 |
atttgttcaagatgatttactttcattcaaatgagttggaaagctcattgttttatcatttgtcaagaggaattctaggtcattcttcataccaagaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568662 |
atttgttcaagatgatttactttcattcaaatgagttggaaagcccattgttttatcatttgtcaagaggaattctaggtcattcttcataccaagaagc |
5568761 |
T |
|
| Q |
116 |
tcattactttgaatgcagtgtcaagtgtttggttatttttaatgccttttgtgatggtattgaacaaattctcctaaggcagaggcagaagttgttggag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568762 |
tcattactttgaatgcagtgtcaagtgtttggttatttttaatgccttttgtgatggtattgaacaaattctcctaaggcagaggcagaagttgttggag |
5568861 |
T |
|
| Q |
216 |
attgtgatttatgcattgcgactcaaagtaacattggtgaagtacattgagaatatgtgctaatgggattgggattacacagg |
298 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5568862 |
attgtgatttatacattgcgactcaaagtaacattggtgaagtacattgagaatatgtgctaatgggactgggattacacagg |
5568944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University