View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_27 (Length: 307)
Name: NF1529_low_27
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 53660722 - 53660984
Alignment:
| Q |
18 |
tgtagcagaccaaaatattggcagaactggaaaaaacataatgcatattaaatttcaaagctatatcataaccatctcaatagttagtttatcatccatt |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53660722 |
tgtagcagaccaaaatattagcagaactggaaaaaacataatgcatattaaatttcaaagctatatcataaccatctcaatagttagtttatcatccatt |
53660821 |
T |
|
| Q |
118 |
ccacataacctcatagcatctaactgtagtctcgtaccaagttttgaattcctctcaaattctcatcctaacccgtgcaaagtgcaaactctatttttaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53660822 |
ccacataacctcatagcatctaactgtagtctcgtaccaagttttgaattcctctcaaattctcatcctaacccgtgcaaagtgcaaactctatttttaa |
53660921 |
T |
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| Q |
218 |
agaacttgaaacttattttaatactttgtggtaataaacagagaggatactcaatcacttact |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53660922 |
agaacttgaaacttattttaatactttgtggtaataaacagagaggatactcaatcacttact |
53660984 |
T |
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