View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_29 (Length: 301)
Name: NF1529_low_29
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 33878949 - 33879057
Alignment:
| Q |
177 |
tgttagagagaggaagaagaaattcacaagtaatgcatattctatacactttccattgaaagatcaaacacttgtattgagctagaaaattactttatcc |
276 |
Q |
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| T |
33878949 |
tgttagagagaggaagaagaaattcacaagtaatgcatattctatacactttccattgaaagatcaaacacttgtattgagctagaaaattactttatcc |
33879048 |
T |
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| Q |
277 |
tctccgtaa |
285 |
Q |
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| T |
33879049 |
tctccgtaa |
33879057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 33878585 - 33878686
Alignment:
| Q |
20 |
cactaagcttatcctctaatgaacatatatatgtgttatcctctaaatctttctctccataagtttaaaattcaaatataaagacaaccaataaatggta |
119 |
Q |
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| T |
33878585 |
cactaagcttatcctctaataaacat------gtgttatcctctaaatctttctctccataagtttaaaattcaaatataaagacaaccaataaatggca |
33878678 |
T |
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| Q |
120 |
cccaatgt |
127 |
Q |
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|||||||| |
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| T |
33878679 |
cccaatgt |
33878686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 33878803 - 33878853
Alignment:
| Q |
127 |
tgcctattatttcaaggaatatactccataacggttcgatcctatttgact |
177 |
Q |
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| T |
33878803 |
tgcctattatttcaaggaatatactccataacggttcgatcctatttgact |
33878853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 45960838 - 45960791
Alignment:
| Q |
48 |
atatgtgttatcctctaaatctttctctccataagtttaaaattcaaa |
95 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
45960838 |
atatttgttatcctctaaagctttctctccataagttcaaaattcaaa |
45960791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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