View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_35 (Length: 278)
Name: NF1529_low_35
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 14247568 - 14247805
Alignment:
| Q |
23 |
agacagtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctgcg |
122 |
Q |
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| T |
14247568 |
agacagtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctgcg |
14247667 |
T |
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| Q |
123 |
tgccaaataagccaaagaccattccggtgccaaatagcagccttgttcaattgtgagtgtggcgattctatcatcaatgttgtttgtgggaggtatgaac |
222 |
Q |
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| T |
14247668 |
tgccaaataagccaaagaccattccggtgccaaatagcagccttgttcaattgtgagtgtggcgattctatcatcaatgttgtttgtgggaggtatgaac |
14247767 |
T |
|
| Q |
223 |
accttatgggtgagtttacttaccaccttgaataggac |
260 |
Q |
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| T |
14247768 |
accttatgggtgagtttacttaccaccttgaataggac |
14247805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 9850593 - 9850723
Alignment:
| Q |
23 |
agacagtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctgcg |
122 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||| ||||||| | | |
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| T |
9850593 |
agacagtaccttcacttcctccgccaattcctccaccctctttaccacattcataaagattaagctattcctagaattccaaataacccaaagtgccgtg |
9850692 |
T |
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| Q |
123 |
tgccaaataagccaaagaccattccggtgcc |
153 |
Q |
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| T |
9850693 |
tgccaaataagccaaagaccattccagtgcc |
9850723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 1330358 - 1330480
Alignment:
| Q |
30 |
accttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctgcgtgccaaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
1330358 |
accttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacccaaagtgccgcgtgccaaa |
1330457 |
T |
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| Q |
130 |
taagccaaagaccattccggtgc |
152 |
Q |
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||||| ||||||||||||||||| |
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| T |
1330458 |
taagcaaaagaccattccggtgc |
1330480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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