View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_36 (Length: 277)
Name: NF1529_low_36
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 33879332 - 33879069
Alignment:
| Q |
6 |
aattctgtcaaaataaaatta--aggagagaggggcaagttgaacaaaaacaaatttaaggataaggagataaatgatagagagacagaaagtttatatc |
103 |
Q |
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||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33879332 |
aattctgtcaaaagaaaatgacaaggagagatgggcaagttgaacaaaaacaaatttaaggataaggagataaatgatagagagacagaaagtttatatc |
33879233 |
T |
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| Q |
104 |
gactcacccaacaacttggtagctacgtccagtaccttcacac----ttgaaggattttcgctataattccaacagattacgagcattaaggaataatct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33879232 |
gactcacccaacaacttggtagctacgtccagtaccttcacacacacttgaaggattttcgctataattccaacagatcacgagcattaaggaataatct |
33879133 |
T |
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| Q |
200 |
gtctaccaacttagccctttgatgaattacaaaaataaggaaataaaaggttgttaggtggcta |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33879132 |
gtctaccaacttagccctttgatgaattacaaaaataaggaaataaaaggttgttaggtggcta |
33879069 |
T |
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