View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_38 (Length: 269)
Name: NF1529_low_38
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 130 - 263
Target Start/End: Original strand, 13397532 - 13397667
Alignment:
| Q |
130 |
gcttgttcccacgtatgatcggagatcaaagactttatttt--ttcatggaaagcttccacttacttgcacatgtggtcatatgcttcgttatatgtagt |
227 |
Q |
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| T |
13397532 |
gcttgttcccacgtatgatcagagatcaaagactttattttttttcatggaaagcttccacttacttgcacatgtggtcatatgtttcgttatatgtagt |
13397631 |
T |
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| Q |
228 |
ttgctccttggttcaattaaatagttttgatgatgt |
263 |
Q |
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| T |
13397632 |
ttgctccttggttcaattaaatagttctgatgatgt |
13397667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 13397435 - 13397532
Alignment:
| Q |
1 |
ttaactattggagcaaaaatttcatagtaaaattcttcgttttgttagaatccttgaccactattcgggatttgtatctcttagagacatcatatgttg |
99 |
Q |
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| T |
13397435 |
ttaactattggaacaaaa-tttcatagtaaaattcttccttttgctagaatccttgaccaccattcgggatttgtatctcttagagacatcatatgttg |
13397532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 6691906 - 6691804
Alignment:
| Q |
95 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt----tttcatggaaagcttccactt |
190 |
Q |
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| T |
6691906 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtctgattggagatcaaagacttcatttcctctttcatggcaagctcccactt |
6691807 |
T |
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| Q |
191 |
act |
193 |
Q |
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| T |
6691806 |
act |
6691804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 796915 - 796989
Alignment:
| Q |
95 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt |
169 |
Q |
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| T |
796915 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt |
796989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 8272912 - 8272838
Alignment:
| Q |
95 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt |
169 |
Q |
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| T |
8272912 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt |
8272838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 19943856 - 19943782
Alignment:
| Q |
95 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt |
169 |
Q |
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| T |
19943856 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt |
19943782 |
T |
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