View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1529_low_4 (Length: 596)

Name: NF1529_low_4
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1529_low_4
NF1529_low_4
[»] chr4 (23 HSPs)
chr4 (177-589)||(35333607-35334019)
chr4 (1-119)||(46016188-46016309)
chr4 (5-102)||(35334096-35334196)
chr4 (3-120)||(38766130-38766250)
chr4 (1-113)||(31307053-31307168)
chr4 (1-119)||(51626287-51626408)
chr4 (9-120)||(9012317-9012431)
chr4 (1-113)||(14854644-14854759)
chr4 (1-101)||(13948591-13948694)
chr4 (1-112)||(35972382-35972496)
chr4 (1-120)||(45994561-45994683)
chr4 (1-110)||(46250545-46250657)
chr4 (27-100)||(33529325-33529398)
chr4 (25-89)||(47023468-47023532)
chr4 (21-98)||(13686663-13686741)
chr4 (30-101)||(25768687-25768757)
chr4 (1-91)||(51853736-51853828)
chr4 (51-112)||(15133467-15133528)
chr4 (26-87)||(31308364-31308425)
chr4 (1-89)||(38844179-38844270)
chr4 (26-93)||(32005153-32005220)
chr4 (27-101)||(36990093-36990167)
chr4 (1-89)||(17135135-17135226)
[»] chr8 (16 HSPs)
chr8 (1-113)||(13468732-13468847)
chr8 (9-119)||(4125005-4125118)
chr8 (1-113)||(2743972-2744087)
chr8 (27-113)||(7839240-7839326)
chr8 (21-101)||(12958084-12958164)
chr8 (26-101)||(30936071-30936146)
chr8 (1-101)||(19715724-19715828)
chr8 (27-89)||(30056012-30056074)
chr8 (1-89)||(15682968-15683059)
chr8 (1-98)||(36994502-36994602)
chr8 (55-119)||(24988595-24988659)
chr8 (62-112)||(39086855-39086905)
chr8 (26-79)||(8034150-8034203)
chr8 (40-119)||(40320177-40320256)
chr8 (41-119)||(8521780-8521857)
chr8 (1-93)||(23981478-23981575)
[»] chr5 (13 HSPs)
chr5 (3-113)||(5123485-5123598)
chr5 (1-119)||(10591966-10592087)
chr5 (1-119)||(31113373-31113494)
chr5 (26-114)||(29553606-29553694)
chr5 (26-112)||(30784974-30785060)
chr5 (26-96)||(36212963-36213033)
chr5 (41-113)||(22187985-22188057)
chr5 (1-88)||(18909313-18909403)
chr5 (26-98)||(41446654-41446726)
chr5 (48-119)||(373745-373816)
chr5 (27-98)||(41433940-41434011)
chr5 (26-110)||(12336018-12336102)
chr5 (26-102)||(32313104-32313180)
[»] chr1 (25 HSPs)
chr1 (21-112)||(42297430-42297521)
chr1 (3-111)||(16756123-16756234)
chr1 (1-113)||(36806650-36806765)
chr1 (1-114)||(9780975-9781091)
chr1 (30-119)||(15642526-15642615)
chr1 (1-113)||(28724711-28724826)
chr1 (1-119)||(18428123-18428243)
chr1 (29-111)||(12035620-12035702)
chr1 (1-114)||(22022159-22022275)
chr1 (30-99)||(10367575-10367644)
chr1 (24-119)||(44913174-44913269)
chr1 (26-79)||(36522257-36522310)
chr1 (46-99)||(49071664-49071717)
chr1 (29-101)||(39547363-39547435)
chr1 (26-101)||(7242806-7242881)
chr1 (26-101)||(46864158-46864233)
chr1 (1-101)||(31733690-31733793)
chr1 (26-98)||(33721007-33721079)
chr1 (27-78)||(11530664-11530715)
chr1 (26-97)||(25655267-25655338)
chr1 (1-90)||(24801420-24801512)
chr1 (26-112)||(32534150-32534235)
chr1 (1-111)||(45806275-45806388)
chr1 (26-86)||(32883561-32883621)
chr1 (26-70)||(33059756-33059800)
[»] chr3 (19 HSPs)
chr3 (1-110)||(27763760-27763872)
chr3 (26-110)||(30995955-30996039)
chr3 (21-120)||(20861310-20861409)
chr3 (21-119)||(38331190-38331288)
chr3 (1-119)||(48204292-48204413)
chr3 (26-119)||(1642673-1642766)
chr3 (21-120)||(39950274-39950373)
chr3 (47-113)||(8757432-8757498)
chr3 (21-113)||(25224761-25224853)
chr3 (21-112)||(55123159-55123250)
chr3 (26-100)||(40294679-40294753)
chr3 (41-90)||(15446078-15446127)
chr3 (27-119)||(11767178-11767270)
chr3 (48-120)||(44941245-44941316)
chr3 (27-101)||(30601658-30601732)
chr3 (67-113)||(40318436-40318482)
chr3 (1-98)||(48210962-48211062)
chr3 (27-88)||(15283139-15283200)
chr3 (26-111)||(46725492-46725576)
[»] chr7 (23 HSPs)
chr7 (1-113)||(29059844-29059959)
chr7 (1-113)||(31492142-31492257)
chr7 (30-120)||(37339713-37339803)
chr7 (3-101)||(19477249-19477349)
chr7 (21-86)||(14545005-14545070)
chr7 (1-100)||(8839281-8839383)
chr7 (20-112)||(21747028-21747120)
chr7 (56-119)||(28665187-28665250)
chr7 (26-100)||(20207564-20207638)
chr7 (1-98)||(28537429-28537525)
chr7 (21-98)||(28828767-28828844)
chr7 (35-100)||(29428792-29428857)
chr7 (1-84)||(13254117-13254203)
chr7 (33-101)||(24172283-24172351)
chr7 (54-113)||(35707941-35708000)
chr7 (26-88)||(7265325-7265387)
chr7 (8-113)||(11486731-11486839)
chr7 (26-88)||(4059705-4059767)
chr7 (54-112)||(31776513-31776571)
chr7 (21-119)||(42741790-42741887)
chr7 (51-112)||(45778956-45779017)
chr7 (27-119)||(23933632-23933724)
chr7 (67-111)||(36821069-36821113)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-113)||(26370-26485)
[»] chr2 (19 HSPs)
chr2 (1-111)||(5394436-5394548)
chr2 (47-120)||(25423832-25423905)
chr2 (1-113)||(31579216-31579331)
chr2 (1-113)||(42745103-42745218)
chr2 (27-113)||(17981566-17981651)
chr2 (1-115)||(9438121-9438238)
chr2 (42-120)||(14551557-14551635)
chr2 (48-97)||(37092198-37092247)
chr2 (29-111)||(12233064-12233146)
chr2 (1-112)||(993793-993906)
chr2 (57-120)||(1682120-1682183)
chr2 (1-71)||(12133259-12133332)
chr2 (1-99)||(39401070-39401171)
chr2 (26-88)||(14121894-14121956)
chr2 (1-110)||(18105353-18105464)
chr2 (26-78)||(17183732-17183784)
chr2 (48-101)||(7020359-7020412)
chr2 (54-99)||(17655756-17655801)
chr2 (26-82)||(35476240-35476296)
[»] chr6 (14 HSPs)
chr6 (1-101)||(12411187-12411290)
chr6 (1-113)||(12836884-12836999)
chr6 (1-112)||(21910244-21910357)
chr6 (1-120)||(28099282-28099404)
chr6 (1-100)||(31412161-31412263)
chr6 (3-86)||(423696-423782)
chr6 (26-98)||(28933205-28933277)
chr6 (21-97)||(21028845-21028919)
chr6 (21-97)||(21028982-21029056)
chr6 (36-100)||(9536844-9536908)
chr6 (26-87)||(27735544-27735605)
chr6 (27-99)||(6062110-6062182)
chr6 (27-101)||(1534320-1534394)
chr6 (27-87)||(278459-278519)
[»] scaffold0009 (1 HSPs)
scaffold0009 (29-114)||(27211-27296)
[»] scaffold0013 (1 HSPs)
scaffold0013 (55-119)||(29133-29197)
[»] scaffold0071 (1 HSPs)
scaffold0071 (41-90)||(16065-16114)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 177 - 589
Target Start/End: Complemental strand, 35334019 - 35333607
Alignment:
Q  177 agtattaagttagacgactattatttatgaatgacttaacatatttaatccattgtcatataaaatatattctgaacttgaatattgtcatattgacaac 276  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35334019 agtattaagttagacgactattatttatgaatgacctaacatatttaatccattgtcata-aaaatatattctgaacttgaatattgtcatattgacaac 35333921  T
Q  277 atctctacagatttcctctagaatagnnnnnnnnnnnnnaataaatattaagagactttactttttcttttt-gaatcaattgagcacctttgcttatta 375  Q
    ||||||||||||||||||||||||||             ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  35333920 atctctacagatttcctctagaatagtttttttttttttaataaatattaagagactttacttttttttttttgaatcaattgagcacctttgcttatta 35333821  T
Q  376 ctccaaagttaggatattttgagaggaccgttaataagacaacaaagaaatgttcacatgagtgataatttgaagatgcccatattttaagacaattttg 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35333820 ctccaaagttaggatattttgagaggaccgttaataagacaacaaagaaatgttcacatgagtgataatttgaagatgcccatattttaagacaattttg 35333721  T
Q  476 atatcgtaggtgtttataatgtcgttannnnnnnnnnnnnggtacaatataatgtcattaatatatcttattttatctaacaatttatcatatcttgttg 575  Q
    |||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35333720 atatcgtaggtgtttataatgtcgttatttttatttttttggtacaatataatgtcattaatatatcttattttatctaacaatttatcatatcttgttg 35333621  T
Q  576 tatcattttcttcg 589  Q
    |||||| |||||||    
T  35333620 tatcatattcttcg 35333607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 46016188 - 46016309
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||| |||||    
T  46016188 tcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttg 46016287  T
Q  98 cgcgttgaggatacccaattta 119  Q
    ||||| |||||||||| |||||    
T  46016288 cgcgtggaggatacccgattta 46016309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 35334196 - 35334096
Alignment:
Q  5 attcagccttgggcatgcag---agttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    ||||||||||||||||||||   ||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  35334196 attcagccttgggcatgcagcagagttaaaactcttagagagagtccgccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcg 35334097  T
Q  102 t 102  Q
    |    
T  35334096 t 35334096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 38766130 - 38766250
Alignment:
Q  3 gaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcg 99  Q
    |||| |||||||||||||||||    |||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||    
T  38766130 gaatccagccttgggcatgcagcagcgttaaaactcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcg 38766229  T
Q  100 cgttgaggatacccaatttat 120  Q
    ||  |||||||||| ||||||    
T  38766230 cgcggaggatacccgatttat 38766250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31307168 - 31307053
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  31307168 tcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttg 31307069  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  31307068 cgcgcggaggataccc 31307053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 51626408 - 51626287
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    ||||||||| |||| ||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  51626408 tcgaatccagccttgggcatgcagcagtgttaaaacttttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttg 51626309  T
Q  98 cgcgttgaggatacccaattta 119  Q
    ||||  |||||||||| |||||    
T  51626308 cgcgcggaggatacccgattta 51626287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 9012317 - 9012431
Alignment:
Q  9 agccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttga 105  Q
    ||||||||||||||||    ||| |||||||||| |||||  ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||  ||    
T  9012317 agccttgggcatgcagcagtgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcgga 9012416  T
Q  106 ggatacccaatttat 120  Q
    |||||||| ||||||    
T  9012417 ggatacccgatttat 9012431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 14854644 - 14854759
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| |||||  ||||| |||||||||||| ||||| ||||| ||||||||||| |||||||    
T  14854644 tcgaatccagccttgggcatgcagcatcgttaaaactcttagggagagcttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttg 14854743  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  14854744 cgcgcggaggataccc 14854759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13948694 - 13948591
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||| ||||||    |||||||||||||| |||||||| |||||||||||  || |||||||||||| ||||||||||| |||||||    
T  13948694 tcgaatccagccttgggtatgcagcagtgttaaaactcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctctgcagttg 13948595  T
Q  98 cgcg 101  Q
    ||||    
T  13948594 cgcg 13948591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 35972382 - 35972496
Alignment:
Q  1 tcgaattcagccttgggcat---gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||| |||||||   |||| ||||||||| |||| |||||| ||||| ||||||||||||||| ||| |||| |||||||||||||||||||    
T  35972382 tcgaatccagccatgggcatacagcagcgttaaaactattagggagagtttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttg 35972481  T
Q  98 cgcgttgaggatacc 112  Q
    || |  |||||||||    
T  35972482 cgtgcggaggatacc 35972496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 45994561 - 45994683
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||||||||||||     |||||||||||||| ||||| ||| || ||||||||||| ||||||||||||  ||||||||||||||||||    
T  45994561 tcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctgacgcccatttgggtctcacaatgctcgagagattagtctccgcagttg 45994660  T
Q  98 cgcgttgaggatacccaatttat 120  Q
    | ||   |||||||||| |||||    
T  45994661 cacgccaaggatacccagtttat 45994683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 46250657 - 46250545
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||| |||||||||||||    |||||||||||||  || || |||||| ||||||||||||||| |||||||||| |||||||||||| ||||    
T  46250657 tcgaatccagtcttgggcatgcagcagtgttaaaactcttatggaaagcctgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttg 46250558  T
Q  98 cgcgttgaggata 110  Q
     |||| |||||||    
T  46250557 tgcgtggaggata 46250545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 33529325 - 33529398
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgc 100  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||| || || ||||||||||||||||||||||    
T  33529325 ttaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgc 33529398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 47023468 - 47023532
Alignment:
Q  25 agttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctc 89  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||  |||||||||||||||||    
T  47023468 agttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggattagtctc 47023532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 13686663 - 13686741
Alignment:
Q  21 gcagagttaaaactctta-gagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgc 98  Q
    |||| ||||||||||||| | |||||| ||||||||||||||||| ||||| ||||||  ||||||||||| |||||||    
T  13686663 gcagcgttaaaactcttaagggagagtttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgc 13686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 25768757 - 25768687
Alignment:
Q  30 aaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    ||||||||| ||||| | ||||| |||||||||| |||||||||| ||||||||||||||| || |||||||    
T  25768757 aaactcttacagagatt-tgccgcccatttgggtgccacaatgcttgaaggattagtctccacaattgcgcg 25768687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 51853736 - 51853828
Alignment:
Q  1 tcgaattcagccttgggcatgcagagt---taaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccg 91  Q
    ||||||||||||||||||||||||  |   |||||||||||| || ||| ||| |||||||| |||| |||||| ||||| |||||||||||||    
T  51853736 tcgaattcagccttgggcatgcagcttccttaaaactcttag-gaaagtttgcggtccattttggtctcacaatactcgagggattagtctccg 51853828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 15133467 - 15133528
Alignment:
Q  51 cgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacc 112  Q
    ||||| |||||||||||||||| | ||  ||||||||||||||||||||||  |||||||||    
T  15133467 cgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 31308364 - 31308425
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtc 87  Q
    ||||||||||||||  ||||||||||||| |||| |||||||||||| | || |||||||||    
T  31308364 gttaaaactcttaggaagagtctgccgtctatttaggtcccacaatgtttgagggattagtc 31308425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 38844270 - 38844179
Alignment:
Q  1 tcgaattcagccttgggcatgca---gagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctc 89  Q
    |||||| |||| |||||||||||   | ||||||||||||||  ||||||||||| |||||||   ||||||||||||||  ||||||||||    
T  38844270 tcgaatccagctttgggcatgcaacagcgttaaaactcttaggaagagtctgccgcccatttgacccccacaatgctcgagagattagtctc 38844179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 32005220 - 32005153
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgca 93  Q
    |||||||||||||| |||||||||||| | |||| | || || |||||||||  ||||||||||||||    
T  32005220 gttaaaactcttagggagagtctgccgcctatttagatctcaaaatgctcgagagattagtctccgca 32005153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 36990167 - 36990093
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    ||||||||||| | || ||| |||||||||||||  ||||||||||||||| | |||||| | ||||||| ||||    
T  36990167 ttaaaactcttggggaaagtttgccgtccatttgaatcccacaatgctcgaggaattagtattcgcagttacgcg 36990093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17135135 - 17135226
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctc 89  Q
    |||||| |||||||| ||||||||    |||||||||||||| |||||| |||||  |||||| |||||| ||  ||||| |||||||||||    
T  17135135 tcgaatccagccttgtgcatgcagcagcgttaaaactcttagggagagtttgccgcgcatttgagtcccagaagactcgagggattagtctc 17135226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13468847 - 13468732
Alignment:
Q  1 tcgaattcagccttgggcatg---cagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||||||||||   ||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  13468847 tcgaatccagccttgggcatgtagcagcgttaaaactcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttg 13468748  T
Q  98 cgcgttgaggataccc 113  Q
    |||   ||||||||||    
T  13468747 cgcacggaggataccc 13468732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 4125118 - 4125005
Alignment:
Q  9 agccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttga 105  Q
    ||||||||||||||||    |||||||||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||    
T  4125118 agccttgggcatgcagcactgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcgga 4125019  T
Q  106 ggatacccaattta 119  Q
    |||||||| |||||    
T  4125018 ggatacccgattta 4125005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 2743972 - 2744087
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| |||||  || ||||||||||||||||||||||||||| |||||||||||||||||||    
T  2743972 tcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 2744071  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  2744072 cgcgcggaggataccc 2744087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 7839326 - 7839240
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggataccc 113  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  7839326 ttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 7839240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 12958164 - 12958084
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    |||| |||||||||||||| ||||| ||| || |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  12958164 gcagcgttaaaactcttagggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcg 12958084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 30936071 - 30936146
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||| |||| |||||||||||||||||||||||    
T  30936071 gttaaaactcttagggagagcctgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcg 30936146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 19715828 - 19715724
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcga-aggattagtctccgcagtt 96  Q
    |||||| |||||||||||||||||    ||||||||||| || |||||  ||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  19715828 tcgaatccagccttgggcatgcagcagcgttaaaactctcagggagagcttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagtt 19715729  T
Q  97 gcgcg 101  Q
    |||||    
T  19715728 gcgcg 19715724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 30056074 - 30056012
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctc 89  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  30056074 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctc 30056012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15682968 - 15683059
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctc 89  Q
    |||||| |||||||||||||||||    |||||||||||||| ||||| |||||| |||||| ||||||||||||||||| |||||| ||||    
T  15682968 tcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 36994602 - 36994502
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||||| |||||||    |||||||||||||  |||||| ||| | ||||||||||||||||| |||||| ||||||||||| |||||||    
T  36994602 tcgaatccagccttggacatgcagcagcgttaaaactcttaaggagagtttgctgcccatttgggtcccacaaggctcgagggattagtctctgcagttg 36994503  T
Q  98 c 98  Q
    |    
T  36994502 c 36994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 24988595 - 24988659
Alignment:
Q  55 catttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    |||||| |||||||||| ||||| ||||||||||||||| |||||| ||||||||||||| ||||    
T  24988595 catttgagtcccacaatactcgagggattagtctccgcaattgcgcattgaggatacccagttta 24988659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 39086855 - 39086905
Alignment:
Q  62 gtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacc 112  Q
    |||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  39086855 gtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacc 39086905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 8034203 - 8034150
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaag 79  Q
    |||||||||||||| |||||  ||| |||||||||||||||||||| |||||||    
T  8034203 gttaaaactcttagggagagcttgcagtccatttgggtcccacaatactcgaag 8034150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 40320177 - 40320256
Alignment:
Q  40 agagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    ||||||| ||||||| |||||| |||||| ||||||||  |||||||||| | |||||  ||  ||||||||||||||||    
T  40320177 agagagtttgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacccaattta 40320256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 8521780 - 8521857
Alignment:
Q  41 gagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    |||||||||  | ||||||| |||||||||||||||| |||||||| ||| ||||||||||  || ||||||| |||||    
T  8521780 gagagtctgatgcccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgattta 8521857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 23981575 - 23981478
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagaga--gagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgca 93  Q
    ||||||||||| |||| |||||||    |||||||||||||||||  |||| ||||  |||||||||||  |||| |||||| | |||||||||||||    
T  23981575 tcgaattcagctttggacatgcaggaacgttaaaactcttagagaaagagtttgccacccatttgggtcgtacaaggctcgaggaattagtctccgca 23981478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 5123598 - 5123485
Alignment:
Q  3 gaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcg 99  Q
    ||||||||||||||||||||||    |||||||||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  5123598 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcg 5123499  T
Q  100 cgttgaggataccc 113  Q
    ||  ||||||||||    
T  5123498 cgcggaggataccc 5123485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10591966 - 10592087
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||| |||||||    
T  10591966 tcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttg 10592065  T
Q  98 cgcgttgaggatacccaattta 119  Q
    ||||  |||||||||| |||||    
T  10592066 cgcgcggaggatacccgattta 10592087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 31113373 - 31113494
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    ||||||||||||||||||||||||    |||||||||||||| ||||| || ||| |||||||| ||||||||| ||||| |||||||||||||||||||    
T  31113373 tcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttg 31113472  T
Q  98 cgcgttgaggatacccaattta 119  Q
    ||||   ||||||||| |||||    
T  31113473 cgcgcgaaggatacccgattta 31113494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 29553606 - 29553694
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggataccca 114  Q
    |||||||||||||| |||||| || ||||||||||||||||| ||||||| |  |||||||||| ||||||| |||| |||||||||||    
T  29553606 gttaaaactcttagggagagtttgtcgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggataccca 29553694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 30785060 - 30784974
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacc 112  Q
    |||||||||||||| |||| |||||| ||||||| |||| ||||||| || | |||||||||||||||||||||||  |||||||||    
T  30785060 gttaaaactcttagggagaatctgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacc 30784974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 36212963 - 36213033
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagtt 96  Q
    |||||||||||||| |||||| ||||| |||||| ||||||||||||||||| ||||| ||||||||||||    
T  36212963 gttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 22188057 - 22187985
Alignment:
Q  41 gagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggataccc 113  Q
    |||||||||||| | |||||||||||||||| || || |||||||||||||||||||||||  ||||||||||    
T  22188057 gagagtctgccgcctatttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggataccc 22187985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18909403 - 18909313
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtct 88  Q
    |||||| |||||||||| ||||||    |||||||||||||| |||| | |||||  ||||||  ||||||||||||||| ||||||||||    
T  18909403 tcgaatccagccttgggtatgcagcagtgttaaaactcttagggagaatttgccgctcatttgaatcccacaatgctcgagggattagtct 18909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 41446726 - 41446654
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgc 98  Q
    ||||||||||||| ||||||| | |||  ||||||||||||||||  |||||  ||||||||||||| |||||    
T  41446726 gttaaaactcttacagagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgctgttgc 41446654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 373816 - 373745
Alignment:
Q  48 tgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    ||||||| |||||||||  |||||| || | |||||| |||||||||||||||   ||||||||||||||||    
T  373816 tgccgtctatttgggtcatacaatgttcaagggattaatctccgcagttgcgcacggaggatacccaattta 373745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 41434011 - 41433940
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgc 98  Q
    |||||||||||| ||||||| | |||  ||||| ||||||||||  |||||  |||||||||||||||||||    
T  41434011 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 41433940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 12336102 - 12336018
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggata 110  Q
    |||||||||||||  ||| |  ||| || ||||| ||||||||||||||| ||  |||||| || |||||||||||| |||||||    
T  12336102 gttaaaactcttaatgagggcttgctgttcattttggtcccacaatgctcaaaaaattagtttctgcagttgcgcgtggaggata 12336018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 32313180 - 32313104
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgt 102  Q
    |||||||||||||  |||||| ||| | ||||||  |||| ||||| ||||| |||||||||||  |||||||||||    
T  32313180 gttaaaactcttaaggagagtttgctgcccatttaagtcctacaatactcgagggattagtctctacagttgcgcgt 32313104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 42297521 - 42297430
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacc 112  Q
    |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  |||||||||    
T  42297521 gcagcgttaaaactcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 42297430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 16756123 - 16756234
Alignment:
Q  3 gaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcg 99  Q
    ||||||||| |||||||||||||   |||||||||||||| |||||  || ||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  16756123 gaattcagcattgggcatgcagaagcgttaaaactcttagggagagcatgtcgtgcatttgggtcccacaatgctcgagggattagtctccgcagttgcg 16756222  T
Q  100 cgttgaggatac 111  Q
    ||  ||||||||    
T  16756223 cgcggaggatac 16756234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 36806650 - 36806765
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||||||||||||||||| |||    |||||||||||||| ||| |||||||| |||||||||| ||||||||||||| ||||||||||| |||||||    
T  36806650 tcgaattcagccttgggcatacagtagcgttaaaactcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctctgcagttg 36806749  T
Q  98 cgcgttgaggataccc 113  Q
    | ||  ||||||||||    
T  36806750 cacgcggaggataccc 36806765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 9781091 - 9780975
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| ||||||| |||| |||||||||||||||||||||||| |||||||| |||| |||||    
T  9781091 tcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtcggccgcccatttgggtcccacaatgctcgagggattagtatccgtagttg 9780992  T
Q  98 cgcgttgaggataccca 114  Q
     |||  ||| |||||||    
T  9780991 ggcgcggagaataccca 9780975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 15642526 - 15642615
Alignment:
Q  30 aaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||  ||||| ||||||||||||||||  |||||||||| |||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgattta 15642615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 28724711 - 28724826
Alignment:
Q  1 tcgaattcagccttgggcatgca---gagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||||||||||||  ||||||   | ||||||||||||||  ||||||||||||||||||| |||| |||||| |||| ||||||||||||||| |||    
T  28724711 tcgaattcagccttgaacatgcaacagtgttaaaactcttaggaagagtctgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattg 28724810  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  28724811 cgcgcggaggataccc 28724826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 18428243 - 18428123
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| || ||||||||||||||    ||||||||| |||| |||||||||| ||||||||||  |||||||||||||| ||||||||||| |||||||    
T  18428243 tcgaatccaaccttgggcatgcagcagtgttaaaacttttagggagagtctgctgtccatttggc-cccacaatgctcgagggattagtctctgcagttg 18428145  T
Q  98 cgcgttgaggatacccaattta 119  Q
    ||||  |||||||||| |||||    
T  18428144 cgcgcggaggatacccgattta 18428123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 12035620 - 12035702
Alignment:
Q  29 aaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatac 111  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| ||| |||| ||| || |||||    
T  12035620 aaaactcttagggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctcagcaattgcacgtggatgatac 12035702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 22022159 - 22022275
Alignment:
Q  1 tcgaattcagccttgggcatgcag-ag--ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||||||||||||| ||  ||||||||||||| ||||   ||||  ||||||||||||||||||  |||| |||||||||||||||||||    
T  22022159 tcgaatccagccttgggcatgcagcagcattaaaactcttagggagaacttgccacccatttgggtcccacaatattcgagggattagtctccgcagttg 22022258  T
Q  98 cgcgttgaggataccca 114  Q
    | ||| |||||||||||    
T  22022259 cacgtggaggataccca 22022275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 10367575 - 10367644
Alignment:
Q  30 aaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcg 99  Q
    |||||||||  |||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  10367575 aaactcttaaggagagtctaccgcccatttgggtccaacaatgctcgaaggattaatctccgcagttgcg 10367644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 44913174 - 44913269
Alignment:
Q  24 gagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    ||||| |||||||||| |||||  ||||| |||| |||||||||||||||||||  |||||||||| |||||| ||||  ||||||||| ||||||    
T  44913174 gagttgaaactcttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaattta 44913269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 36522310 - 36522257
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaag 79  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  36522310 gttaaaactcttagggagagtttgccgtccatttgagtcccacaatgctcgaag 36522257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 49071664 - 49071717
Alignment:
Q  46 tctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcg 99  Q
    |||||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  49071664 tctgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcg 49071717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 39547435 - 39547363
Alignment:
Q  29 aaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    ||||||||||| | |||||||||| | |||| |||| ||||||| |||| |||||| ||||||||||||||||    
T  39547435 aaaactcttagggggagtctgccgcctatttaggtctcacaatgttcgacggattaatctccgcagttgcgcg 39547363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 7242881 - 7242806
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    |||||||||||||| |||||||| ||  |||||||  || || ||| ||||| |||||||||||||||||||||||    
T  7242881 gttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccgcagttgcgcg 7242806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 46864158 - 46864233
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    ||||||| |||||| ||||   ||||||||||||||||  ||||||| |||| ||||||||||| |||||||||||    
T  46864158 gttaaaattcttagggagaacttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcg 46864233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31733793 - 31733690
Alignment:
Q  1 tcgaattcagccttgggcatgcag---agttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    ||||||||||| || |||||||||   ||||||||||||||| |||||| || ||||||| |||||  |||||  || || | |||||||||| ||||||    
T  31733793 tcgaattcagcattaggcatgcagcagagttaaaactcttagggagagtttgtcgtccatctgggtgtcacaagactggatgaattagtctccacagttg 31733694  T
Q  98 cgcg 101  Q
    ||||    
T  31733693 cgcg 31733690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 33721007 - 33721079
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgc 98  Q
    |||||| ||||||| |||||| |||||||||||||| |||||||| | ||||  ||||||||| |||| ||||    
T  33721007 gttaaatctcttagggagagtttgccgtccatttggatcccacaaggttcgagagattagtcttcgcaattgc 33721079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 11530664 - 11530715
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaa 78  Q
    ||||||||||||  |||||| ||||||||||||| || ||||||||||||||    
T  11530664 ttaaaactcttaaggagagtttgccgtccatttgagttccacaatgctcgaa 11530715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 25655338 - 25655267
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    ||||||||||||||||||||| ||||||||||||   || |||||||||  |  |||||||||| |||||||    
T  25655338 gttaaaactcttagagagagtttgccgtccatttaaatcacacaatgctaaagagattagtctctgcagttg 25655267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24801420 - 24801512
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctcc 90  Q
    |||||| ||||||| |||||||||    |||||||||||||| |||||| | ||||||||||| |||||||||  ||| |  |||||||||||    
T  24801420 tcgaatccagccttaggcatgcagcactgttaaaactcttagggagagtttaccgtccatttgagtcccacaagactcaagagattagtctcc 24801512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 32534150 - 32534235
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacc 112  Q
    ||||||||||||||||||||  | ||| ||||| || || ||||||||||||  | |||||||||||| |||||||  |||||||||    
T  32534150 gttaaaactcttagagagagcttaccgcccattagg-tctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacc 32534235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 45806275 - 45806388
Alignment:
Q  1 tcgaattcagccttgggcatgcag-ag--ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||||||| ||||||||||||| ||  ||||||||||||| |||||  | ||| | ||||  ||| ||||||  ||||| |||||||||| ||||||     
T  45806275 tcgaattcagtcttgggcatgcagcagttttaaaactcttagggagagcataccgcctatttaagtctcacaatattcgaatgattagtctctgcagtta 45806374  T
Q  98 cgcgttgaggatac 111  Q
    ||||| ||||||||    
T  45806375 cgcgtggaggatac 45806388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 32883621 - 32883561
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagt 86  Q
    |||||||||||||| |||||| ||||| ||||||||  |||||||  ||||| ||||||||    
T  32883621 gttaaaactcttagggagagtttgccgcccatttggaccccacaagactcgagggattagt 32883561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 33059800 - 33059756
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaa 70  Q
    |||||||||||||  |||||| ||||| |||||||||||||||||    
T  33059800 gttaaaactcttaaggagagtttgccgcccatttgggtcccacaa 33059756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27763760 - 27763872
Alignment:
Q  1 tcgaattcagccttgggcatgca---gagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||||||||| ||   | |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  27763760 tcgaatccagccttgggcatacaacagtgttaaaactcttagggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttg 27763859  T
Q  98 cgcgttgaggata 110  Q
    ||||  |||||||    
T  27763860 cgcgcagaggata 27763872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 30996039 - 30995955
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggata 110  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  30996039 gttaaaactcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 30995955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 20861310 - 20861409
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaatttat 120  Q
    |||| |||||||||||||| ||||| |||||| |||||||||| ||| ||||||||| ||||||||||||||||||| |||  ||||||||||| |||||    
T  20861310 gcagcgttaaaactcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggatacccagtttat 20861409  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 38331190 - 38331288
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    |||| ||||||||||||||||||||  ||||| ||||||||||||||||||| | || |||||||||||||||||||| ||  |||||||||| |||||    
T  38331190 gcagcgttaaaactcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgattta 38331288  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 48204413 - 48204292
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||| ||||| |||||  || ||||||||||||| ||||||||||| | |||||||| ||||||||||    
T  48204413 tcgaatccagccttgggcatgcagcaacgttaaaacccttagggagagcttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttg 48204314  T
Q  98 cgcgttgaggatacccaattta 119  Q
    ||||  |||||||||| |||||    
T  48204313 cgcgcggaggatacccgattta 48204292  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 1642673 - 1642766
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||| || || |||||||| ||||||||||||||  ||||||| || |||||    
T  1642673 gttaaaacttttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccgattta 1642766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 39950274 - 39950373
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaatttat 120  Q
    |||| ||||||| | |||| |||| |||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||  |  |||||||||||||||||    
T  39950274 gcagcgttaaaatttttagggagaatctgtcgttcatttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggatacccaatttat 39950373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 8757432 - 8757498
Alignment:
Q  47 ctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggataccc 113  Q
    |||||| | |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  8757432 ctgccgcctatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 8757498  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 25224761 - 25224853
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggataccc 113  Q
    |||| |||||||||||||  ||||   ||||| |||||| ||||||||||||||| | |||||||||||||||||||| ||  ||||||||||    
T  25224761 gcagcgttaaaactcttaaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggataccc 25224853  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 55123159 - 55123250
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacc 112  Q
    |||| ||||||| |||||| |||||  |||   ||||||||||| |||||||||||| |||||||||| ||||||||||||  |||||||||    
T  55123159 gcagcgttaaaattcttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacc 55123250  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 40294679 - 40294753
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgc 100  Q
    |||||||||||||| || ||  |||||  ||||||  ||||||||| ||||||||||||||||||||||||||||    
T  40294679 gttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgc 40294753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 15446078 - 15446127
Alignment:
Q  41 gagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctcc 90  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  15446078 gagagtttgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 11767178 - 11767270
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    |||||||||||||  || |  ||||| ||||||| ||||||||||  | ||||||||||||| |||| || ||||| |||||||||| |||||    
T  11767178 ttaaaactcttagcaagtgcttgccgcccatttgagtcccacaatatttgaaggattagtcttcgcaattacgcgtggaggatacccgattta 11767270  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 44941316 - 44941245
Alignment:
Q  48 tgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaatttat 120  Q
    ||||| |||||||| |||||  |||||||| |||||||||||||||||||||||  ||||||| ||| |||||    
T  44941316 tgccgcccatttggatcccattatgctcga-ggattagtctccgcagttgcgcgcggaggatatccagtttat 44941245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 30601732 - 30601658
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    ||||||||||||| |||||| | || || |||||| | |||||| | | ||| ||||||||||||||||||||||    
T  30601732 ttaaaactcttagggagagtttaccatctatttggattccacaaagtttgaacgattagtctccgcagttgcgcg 30601658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 40318482 - 40318436
Alignment:
Q  67 acaatgctcgaaggattagtctccgcagttgcgcgttgaggataccc 113  Q
    |||||| |||| |||||||||||||||||||||||  ||||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggataccc 40318436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 48211062 - 48210962
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||| ||||||||    |||||||||||||  |||||  ||||||| |||| ||||||||||| ||||| | |||  ||||||||||||    
T  48211062 tcgaatccagccttgagcatgcagcaacgttaaaactcttatggagagcttgccgtctatttaggtcccacaatactcgaggaattgatctccgcagttg 48210963  T
Q  98 c 98  Q
    |    
T  48210962 c 48210962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 15283139 - 15283200
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtct 88  Q
    ||||||||||||  || ||  ||||| ||||||||||||||||||||||||  |||||||||    
T  15283139 ttaaaactcttatggaaagattgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 46725492 - 46725576
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatac 111  Q
    |||||||||||||| || ||| ||| |||||| ||||| |||||||||| || |||||||||||  ||||| ||||  ||||||||    
T  46725492 gttaaaactcttagggatagtttgctgtccatctgggt-ccacaatgcttgagggattagtctcttcagttacgcgcggaggatac 46725576  T

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Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 29059844 - 29059959
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| ||||| |||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  29059844 tcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttg 29059943  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  29059944 cgcgcggaggataccc 29059959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 31492142 - 31492257
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| ||||| |||||| |||||| ||||||||||||||||| |||||||||||||||||||    
T  31492142 tcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttg 31492241  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  31492242 cgcgcggaggataccc 31492257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 37339803 - 37339713
Alignment:
Q  30 aaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaatttat 120  Q
    |||||||||| |||||||||||| | |||||||||||| ||||||||| ||||||||||||||||||||||   |||||||||| ||||||    
T  37339803 aaactcttagtgagagtctgccgcctatttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgatttat 37339713  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 19477349 - 19477249
Alignment:
Q  3 gaattcagccttgggcatgca---gagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcg 99  Q
    |||| ||||||||||||||||   | |||||||||||||| |||||  ||||| ||||||||||||||||||||| || |||||||||||||||||||||    
T  19477349 gaatccagccttgggcatgcaacagtgttaaaactcttagggagagcttgccggccatttgggtcccacaatgct-gagggattagtctccgcagttgcg 19477251  T
Q  100 cg 101  Q
    ||    
T  19477250 cg 19477249  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 14545005 - 14545070
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagt 86  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  14545005 gcagtgttaaaactcttagggagagcctgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8839383 - 8839281
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| |||| ||||||| | |||| | ||||||||| ||||| ||||||||||||||| |||    
T  8839383 tcgaatccagccttgggcatgcagcagcgttaaaactcttagggagaatctgccgcctatttagatcccacaatactcgagggattagtctccgcaattg 8839284  T
Q  98 cgc 100  Q
    |||    
T  8839283 cgc 8839281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 21747120 - 21747028
Alignment:
Q  20 tgcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacc 112  Q
    ||||| |||||||||||||| ||||| || ||  |||||||||||||||||| ||||| |||||||||| |||||||| |||  |||||||||    
T  21747120 tgcagcgttaaaactcttagggagagcctaccacccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacc 21747028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 28665187 - 28665250
Alignment:
Q  56 atttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    |||| ||||||||||||||||| |||||||||||||||||||| ||  ||||||||||| ||||    
T  28665187 attttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacccagttta 28665250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 20207564 - 20207638
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgc 100  Q
    |||||||||||||  |||||  |||||  ||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  20207564 gttaaaactcttaaggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgc 20207638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28537429 - 28537525
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||||||||||||     |||||||||||||| ||||| |||||| ||||||||||||    ||||| || |||||||||||||||||||    
T  28537429 tcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctgccgcccatttgggtcc----atgcttgagggattagtctccgcagttg 28537524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 28828844 - 28828767
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgc 98  Q
    |||| ||||||||||| ||||||||| |  |||||||||||||| ||||| |||| | |||||||||| |||||||||    
T  28828844 gcagcgttaaaactctcagagagagtttatcgtccatttgggtctcacaaggctcaatggattagtctgcgcagttgc 28828767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 29428857 - 29428792
Alignment:
Q  35 cttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgc 100  Q
    ||||| |||||| ||||| |||||||| |||||||||| |||| ||||||||||| ||||||||||    
T  29428857 cttagggagagtttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttgcgc 29428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13254203 - 13254117
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggatta 84  Q
    |||||| ||||||| |||||||||    ||| |||||||||| ||||| |||||| |||||| ||||||||||||||||| ||||||    
T  13254203 tcgaatccagccttaggcatgcagcagcgttgaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 24172283 - 24172351
Alignment:
Q  33 ctcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    ||||||| |||||  ||||| ||| |||| ||||||||||||||||||||||||||  |||||||||||    
T  24172283 ctcttagtgagagcttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcg 24172351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 35707941 - 35708000
Alignment:
Q  54 ccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggataccc 113  Q
    |||||| | ||| ||||||||||| ||||||||||| |||||||||||| ||||||||||    
T  35707941 ccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggataccc 35708000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 7265387 - 7265325
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtct 88  Q
    |||||||||||||| |||||| ||| |  ||||||||||||||||| |||||| |||||||||    
T  7265387 gttaaaactcttagggagagtttgctgctcatttgggtcccacaatactcgaatgattagtct 7265325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 11486839 - 11486731
Alignment:
Q  8 cagccttgggcatgca---gagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttg 104  Q
    ||||||||||||||||   | |||||||||||||   ||||  ||||| |||||||||| ||||||||||| |  ||||||||||  ||||||||||  |    
T  11486839 cagccttgggcatgcatctgtgttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcgg 11486740  T
Q  105 aggataccc 113  Q
    |||||||||    
T  11486739 aggataccc 11486731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 4059767 - 4059705
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtct 88  Q
    ||||||||||||||||||||| | ||||  ||||||||| |||||  ||||| ||||||||||    
T  4059767 gttaaaactcttagagagagttttccgtttatttgggtcacacaagactcgagggattagtct 4059705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 31776513 - 31776571
Alignment:
Q  54 ccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacc 112  Q
    |||||||||||||||||| ||||| |||||| ||| |||||||||| |  |||||||||    
T  31776513 ccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacc 31776571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 42741887 - 42741790
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    |||| ||||||||| |||| ||||  |||||  |||||||||||| | ||| ||||| |||||| |||| |||||||||||  |||||||||| |||||    
T  42741887 gcagtgttaaaacttttagggagaacctgccacccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacccgattta 42741790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 45778956 - 45779017
Alignment:
Q  51 cgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacc 112  Q
    ||||| |||| ||| |||||| ||||| |||||||||||||||||||||  | |||||||||    
T  45778956 cgtccgtttgagtctcacaatactcgagggattagtctccgcagttgcgaatggaggatacc 45779017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 23933724 - 23933632
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    |||||||| |||| |||||| ||||| |||||| ||| | ||||| || || ||||||||||| ||| |||| |   ||||||||||||||||    
T  23933724 ttaaaacttttagggagagtttgccgcccatttaggttcgacaatacttgagggattagtctctgcaattgcacacagaggatacccaattta 23933632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 36821113 - 36821069
Alignment:
Q  67 acaatgctcgaaggattagtctccgcagttgcgcgttgaggatac 111  Q
    ||||||||||| ||||||||||| |||||||||||  ||||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatac 36821069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 26370 - 26485
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| ||||| |||||| ||||||||||||||||||| ||||  ||||||||||||||||||    
T  26370 tcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttg 26469  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  26470 cgcgcggaggataccc 26485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 5394436 - 5394548
Alignment:
Q  1 tcgaattcagccttgggcatgcaga--gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgc 98  Q
    |||||| |||||||||||||||||   |||||||||||||| ||||| |||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  5394436 tcgaatccagccttgggcatgcagcatgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgc 5394535  T
Q  99 gcgttgaggatac 111  Q
     ||  ||||||||    
T  5394536 acgcggaggatac 5394548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 25423832 - 25423905
Alignment:
Q  47 ctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaatttat 120  Q
    |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||    
T  25423832 ctgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacccgatttat 25423905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31579331 - 31579216
Alignment:
Q  1 tcgaattcagccttgggcatgca---gagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||||||||||||   | ||||||||| |||| |||||||||||| ||||||  |||||||||||||||| | |||||| ||||||||||    
T  31579331 tcgaatccagccttgggcatgcaacagtgttaaaacttttagggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttg 31579232  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  31579231 cgcgcggaggataccc 31579216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 42745218 - 42745103
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    |||||||||||||| |||||||||| | | |||||||| |||||||| |||| ||||||||||| |||||||    
T  42745218 tcgaatccagccttgggcatgcagcaatgttaaaactcttagggagagtctgctgcctatttgggttccacaatggtcgagggattagtctcagcagttg 42745119  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  42745118 cgcgcggaggataccc 42745103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 17981566 - 17981651
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggataccc 113  Q
    ||||||||||||| |||||  ||||| | ||||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||    
T  17981566 ttaaaactcttagggagagcttgccg-caatttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggataccc 17981651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9438238 - 9438121
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    ||||||||||||||  |||  |||||| ||||||| ||||||||||||| || |||||||| ||| ||||||    
T  9438238 tcgaatccagccttgggcatgcagcagggttaaaactcttaggaagaacctgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttg 9438139  T
Q  98 cgcgttgaggatacccaa 115  Q
    ||||  ||||||| ||||    
T  9438138 cgcgcggaggatatccaa 9438121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 14551557 - 14551635
Alignment:
Q  42 agagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaatttat 120  Q
    ||||||||||| | |||||||||| ||||||||||| |||||| ||||||||||||||||  |||||||| | ||||||    
T  14551557 agagtctgccgcctatttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgatttat 14551635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 37092247 - 37092198
Alignment:
Q  48 tgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  37092247 tgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttg 37092198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 12233146 - 12233064
Alignment:
Q  29 aaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatac 111  Q
    |||||||||||||||||| ||||| ||||||  ||  |||||||||||| |||||||||||| ||||| ||| | ||||||||    
T  12233146 aaaactcttagagagagtttgccgcccatttaagtttcacaatgctcgagggattagtctccacagttacgcttggaggatac 12233064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 993793 - 993906
Alignment:
Q  1 tcgaattcagccttgggcatgcag-agt-taaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgc 98  Q
    ||||||||| |||||||||||||| ||  |||||||||||| ||||   ||||| |||||||||||| ||||| ||  | |||||||| ||||| |||||    
T  993793 tcgaattcaaccttgggcatgcagcagcgtaaaactcttagggagaacttgccgcccatttgggtcctacaatactgaatggattagtttccgccgttgc 993892  T
Q  99 gcgttgaggatacc 112  Q
    |||| |||||||||    
T  993893 gcgtggaggatacc 993906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 1682120 - 1682183
Alignment:
Q  57 tttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaatttat 120  Q
    ||||||||| | ||| ||||| ||||||||||||||||||||||   |||||||||||||||||    
T  1682120 tttgggtcctataatactcgagggattagtctccgcagttgcgcacagaggatacccaatttat 1682183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12133332 - 12133259
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaat 71  Q
    |||||| ||||||||| |||||||    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  12133332 tcgaatccagccttggacatgcagcaacgttaaaactcttagggagagcctgccgtccatttgggtcctacaat 12133259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 39401171 - 39401070
Alignment:
Q  1 tcgaattcagccttgggcatgcagagt---taaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    ||||||||||||||||||||||||  |   ||||||| |||| |||||   | ||||||||| ||||||||||||||||   |||||| |||||||||||    
T  39401171 tcgaattcagccttgggcatgcagtatcattaaaacttttagggagagctcgtcgtccatttaggtcccacaatgctcgtgagattagactccgcagttg 39401072  T
Q  98 cg 99  Q
    ||    
T  39401071 cg 39401070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 14121956 - 14121894
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtct 88  Q
    ||||||| |||||||||||   ||||| ||||||| |||||||||||||||| ||||||||||    
T  14121956 gttaaaattcttagagagaacttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 18105464 - 18105353
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||||||||||||     ||||||| |||||  ||||| |||||| ||||||| ||| |||||| ||||| |||||||||| ||||||||    
T  18105464 tcgaatccagccttgggcatgcaacaacgttaaaattcttatggagagcctgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttg 18105366  T
Q  98 cgcgttgaggata 110  Q
    ||||  |||||||    
T  18105365 cgcgcggaggata 18105353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 17183784 - 17183732
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaa 78  Q
    ||||||||||||||||||||| ||| |||||||||  | ||||||||||||||    
T  17183784 gttaaaactcttagagagagtttgctgtccatttgaattccacaatgctcgaa 17183732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 7020412 - 7020359
Alignment:
Q  48 tgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    ||||| |||||||||||| |||||||||||  ||||||||||  ||||||||||    
T  7020412 tgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcg 7020359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 17655756 - 17655801
Alignment:
Q  54 ccatttgggtcccacaatgctcgaaggattagtctccgcagttgcg 99  Q
    |||||||| | |||||| |||||| |||||||||||||||||||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcg 17655801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 35476240 - 35476296
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggat 82  Q
    |||||||||||| | |||||| || |||||||||||||| |||||  ||||||||||    
T  35476240 gttaaaactcttcgggagagtttgtcgtccatttgggtctcacaaaactcgaaggat 35476296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12411187 - 12411290
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    ||||||||||||||  ||||||||||| ||||||  ||||||||||||| || |||||||||||| ||||||    
T  12411187 tcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtctgccgcccatttaagtcccacaatgcttgagggattagtctccacagttg 12411286  T
Q  98 cgcg 101  Q
    ||||    
T  12411287 cgcg 12411290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 12836999 - 12836884
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||| |||||||||    |||||||||||||| |||||   |||| ||||||||||||||||||||| || |||||||||||| ||||||    
T  12836999 tcgaatccagccttaggcatgcagcagcgttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttg 12836900  T
Q  98 cgcgttgaggataccc 113  Q
    ||||  ||||||||||    
T  12836899 cgcgcggaggataccc 12836884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 21910244 - 21910357
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| ||||||||||||||||     |||||||||||||||||||||||||||  ||||| ||||||||||| ||| | |||||||||||||||||||    
T  21910244 tcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc-agggattagtctccgcagttg 21910342  T
Q  98 cgcgttgaggatacc 112  Q
    | ||  |||||||||    
T  21910343 cacgcggaggatacc 21910357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 28099282 - 28099404
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||||| |||||||||||||||||    ||||||||| |||| |||| | || |||||||||| || ||| ||||||||| |||||||||||||||||||    
T  28099282 tcgaatccagccttgggcatgcagcagtgttaaaacttttagggagaatttgtcgtccatttgagttccataatgctcgagggattagtctccgcagttg 28099381  T
Q  98 cgcgttgaggatacccaatttat 120  Q
    || |  ||||||||||| |||||    
T  28099382 cgagcggaggatacccagtttat 28099404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 31412161 - 31412263
Alignment:
Q  1 tcgaattcagccttgggcatgcaga---gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    ||||||||||| |||||| |||||    |||||||||||||| |||||||||||| |||||||||| |||||||||||||   |||||||||| ||||||    
T  31412161 tcgaattcagctttgggcgtgcagcagtgttaaaactcttagggagagtctgccgcccatttgggttccacaatgctcgagaaattagtctccacagttg 31412260  T
Q  98 cgc 100  Q
    |||    
T  31412261 cgc 31412263  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 423696 - 423782
Alignment:
Q  3 gaattcagccttgggcatgc---agagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagt 86  Q
    |||| |||||||||||||||   || ||||||||||||||||| |  |||||||||||||| |||||||||||||||| ||||||||    
T  423696 gaatccagccttgggcatgctgcagcgttaaaactcttagagataaactgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 28933205 - 28933277
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgc 98  Q
    ||||||| ||||||||||||| ||||| |||||||||| |||||||||||||  || |||| |||||||||||    
T  28933205 gttaaaattcttagagagagtttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttgc 28933277  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 21028919 - 21028845
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||| ||||||||||||||||||  | ||||| |||||||||| |||||| |||| | |||||||||||||||||||    
T  21028919 gcagcgttaaaactcttagagag--tttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028845  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 21029056 - 21028982
Alignment:
Q  21 gcagagttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttg 97  Q
    |||| ||||||||||||||||||  | ||||| |||||||||| |||||| |||| | |||||||||||||||||||    
T  21029056 gcagcgttaaaactcttagagag--tttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028982  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 9536844 - 9536908
Alignment:
Q  36 ttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgc 100  Q
    |||| ||||| || |||||||||| | | ||||||||||||| ||||||||||||||||||||||    
T  9536844 ttagggagagcctaccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgc 9536908  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 27735544 - 27735605
Alignment:
Q  26 gttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtc 87  Q
    ||||||||||||||||| ||| |  ||||||||||  |||||||||| ||||||||||||||    
T  27735544 gttaaaactcttagagaaagtttttcgtccatttgaatcccacaatgttcgaaggattagtc 27735605  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 6062110 - 6062182
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcg 99  Q
    |||||||||||||  ||||  |||||| ||||||||||| |||| | |||| |||||||||| ||||||||||    
T  6062110 ttaaaactcttaggaagagcttgccgttcatttgggtcctacaacgttcgatggattagtcttcgcagttgcg 6062182  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 1534320 - 1534394
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcg 101  Q
    ||||||||||||| |||||  || || ||||||| ||| |||||||||||| | |||  ||||||||||||||||    
T  1534320 ttaaaactcttagggagagcttgtcgcccatttgagtcgcacaatgctcgaggaattgatctccgcagttgcgcg 1534394  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 278459 - 278519
Alignment:
Q  27 ttaaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtc 87  Q
    ||||||||||||  |||||| |||||||||||| ||||||||||  ||| | |||||||||    
T  278459 ttaaaactcttatggagagtttgccgtccatttaggtcccacaaaactcaagggattagtc 278519  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 27296 - 27211
Alignment:
Q  29 aaaactcttagagagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggataccca 114  Q
    ||||||||||| |||||  ||||| |||||||| || ||| |||||||| |||||||||| ||||||||||||  |||||||||||    
T  27296 aaaactcttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggataccca 27211  T

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Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 29197 - 29133
Alignment:
Q  55 catttgggtcccacaatgctcgaaggattagtctccgcagttgcgcgttgaggatacccaattta 119  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||  |||||||||| |||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgattta 29133  T

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Target: scaffold0071 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 16114 - 16065
Alignment:
Q  41 gagagtctgccgtccatttgggtcccacaatgctcgaaggattagtctcc 90  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  16114 gagagtttgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

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