View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_40 (Length: 265)
Name: NF1529_low_40
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 31182581 - 31182820
Alignment:
| Q |
11 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
110 |
Q |
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| T |
31182581 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
31182680 |
T |
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| Q |
111 |
attatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgccttt |
210 |
Q |
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| T |
31182681 |
actatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgccttt |
31182780 |
T |
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| Q |
211 |
ctggaaccattccttccacaattggaaacttgaaaaatct |
250 |
Q |
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| T |
31182781 |
ctggaaccattccttccacaattggaaacttgaaaaatct |
31182820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 31138866 - 31139102
Alignment:
| Q |
11 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
110 |
Q |
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| T |
31138866 |
catagggaacatgagcaaattaaataaactctaccttgctaaaaacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgacc |
31138965 |
T |
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| Q |
111 |
attatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgccttt |
210 |
Q |
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| T |
31138966 |
ttgatctacctttttaacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgccttt |
31139065 |
T |
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| Q |
211 |
ctggaaccattccttccacaattggaaacttgaaaaa |
247 |
Q |
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| T |
31139066 |
ctggaaccattccttccacaattggaaacttgaaaaa |
31139102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 31101489 - 31101725
Alignment:
| Q |
11 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
110 |
Q |
| |
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|||||| |||||||| ||||||||| ||| || || ||||||||| ||| | | ||| |||||||| |||||||||||||||||||||||||||| | |
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| T |
31101489 |
catagggaacatgagcaaattaaatcaactcatgtttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgacc |
31101588 |
T |
|
| Q |
111 |
attatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgccttt |
210 |
Q |
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| T |
31101589 |
ttgatctacctttataacatgagtctttctggttcaatccctgattcagtacaaaacttgattaatttggatgtacttgcactttatatgaataaccttt |
31101688 |
T |
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| Q |
211 |
ctggaaccattccttccacaattggaaacttgaaaaa |
247 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
31101689 |
ctggattcattccttccacaattggaaacttgaaaaa |
31101725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 31057054 - 31057293
Alignment:
| Q |
11 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
110 |
Q |
| |
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|||||| ||| |||| |||||| || |||| | |||| ||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
31057054 |
catagggaacttgagcaaattagatacacttgttctttctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgacc |
31057153 |
T |
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| Q |
111 |
attatcttacttt-ataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgcctt |
209 |
Q |
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| ||| ||||| ||||||| |||||||||||||||||||||| || | |||||||| ||||| |||| | |||||||||||| ||||| |||| |
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| T |
31057154 |
gtactct-actttgataacataggtctttctggttcaatccctgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctt |
31057252 |
T |
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| Q |
210 |
tctggaaccattccttccacaattggaaacttgaaaaatct |
250 |
Q |
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|||||| ||||||||||||| |||||| ||||||||||||| |
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| T |
31057253 |
tctggatccattccttccactattggagacttgaaaaatct |
31057293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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