View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_43 (Length: 256)
Name: NF1529_low_43
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 3855529 - 3855702
Alignment:
| Q |
2 |
tgagatggacatcatcaacaaacccattgactacagggtgaagccaacgaagcaacgaggcagagttgcaaaagcaagacgcagacaaaagagttaacgt |
101 |
Q |
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| T |
3855529 |
tgagatcgacatgatcaacaaacccattgactacagggtgaagccaacgaagcaacgaggcagagttgcaaaagcaagacgcagacaaaagagttaatgt |
3855628 |
T |
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| Q |
102 |
tttgataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttggtcat |
175 |
Q |
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| T |
3855629 |
tttgataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttgttcat |
3855702 |
T |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 3855695 - 3855731
Alignment:
| Q |
205 |
ttgttcataatttatttatacataaaaatgtttattt |
241 |
Q |
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| T |
3855695 |
ttgttcataatttatttatacataaaaatgtttattt |
3855731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 4141041 - 4140973
Alignment:
| Q |
55 |
aacgaggcagagttgcaaaagcaagacgcagacaaaagagttaacgttttgataggaggctgtctgtca |
123 |
Q |
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| T |
4141041 |
aacgaggcagagttgcagaagcgagacgcggacaaaagagttaatgttttgataggtagctgtctgtca |
4140973 |
T |
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