View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_45 (Length: 253)
Name: NF1529_low_45
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_45 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 49 - 253
Target Start/End: Complemental strand, 6037731 - 6037527
Alignment:
| Q |
49 |
ctcagatgtctaactgtgttactcatgacgattcaattgcagttattcaatattggagcaagtttgacaaatgaaagaattgaagaaaatattcaccatt |
148 |
Q |
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| T |
6037731 |
ctcagatgtctaactgtgttactcatgacgattcaattgcagttattcaatattggagcaagtttgacaaatgaaagaattgaagaaaatattcaccatt |
6037632 |
T |
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| Q |
149 |
gcctgaatgattacacatcaagtatttatactaggctaaatcaactaagtaacttgttcagcaagttaccggttgtaactaactgttaacaatcttctaa |
248 |
Q |
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| T |
6037631 |
gcctgaatgattacacatcaagtatttatattaggctaaatcaactaagtaacttgttgagcaagttaccggttgtaactaactgttaacaatcttctaa |
6037532 |
T |
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| Q |
249 |
cagtc |
253 |
Q |
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||||| |
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| T |
6037531 |
cagtc |
6037527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 55059105 - 55059176
Alignment:
| Q |
160 |
tacacatcaagtatttatactaggctaaatcaactaagtaacttgttcagcaagttaccggttgtaactaact |
232 |
Q |
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| T |
55059105 |
tacacatcaagtaattatactaatctaagagaactgaataacttgttcaacaagtta-cggttgtaactaact |
55059176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 31475681 - 31475619
Alignment:
| Q |
53 |
gatgtctaactgtgttactcatgacgattcaattgcagttattcaatattggagcaagtttga |
115 |
Q |
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| T |
31475681 |
gatgtctaactgtgttactcatgaagattaaattggagttattcattattggagcaggtttga |
31475619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 40843063 - 40843001
Alignment:
| Q |
53 |
gatgtctaactgtgttactcatgacgattcaattgcagttattcaatattggagcaagtttga |
115 |
Q |
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|||||||||||||||||||||||| |||| |||| |||||||||| |||||||||| |||||| |
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| T |
40843063 |
gatgtctaactgtgttactcatgaagattaaattccagttattcattattggagcaggtttga |
40843001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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