View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1529_low_48 (Length: 248)

Name: NF1529_low_48
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1529_low_48
NF1529_low_48
[»] chr2 (4 HSPs)
chr2 (14-247)||(42255384-42255621)
chr2 (132-201)||(12434200-12434269)
chr2 (128-201)||(7317190-7317263)
chr2 (146-201)||(26604111-26604166)
[»] chr4 (9 HSPs)
chr4 (133-201)||(44498273-44498341)
chr4 (145-201)||(42672730-42672786)
chr4 (141-201)||(51290305-51290365)
chr4 (141-201)||(47189513-47189573)
chr4 (139-201)||(27064824-27064887)
chr4 (139-201)||(27085928-27085991)
chr4 (146-197)||(39262031-39262082)
chr4 (141-197)||(53924587-53924643)
chr4 (128-198)||(25950351-25950419)
[»] chr5 (1 HSPs)
chr5 (127-201)||(16283947-16284021)
[»] chr1 (3 HSPs)
chr1 (140-201)||(29865958-29866019)
chr1 (140-201)||(43177638-43177699)
chr1 (141-201)||(44127521-44127581)
[»] chr3 (5 HSPs)
chr3 (132-187)||(14195574-14195629)
chr3 (139-197)||(19651953-19652011)
chr3 (139-201)||(36473528-36473590)
chr3 (146-197)||(34137744-34137795)
chr3 (141-201)||(21890811-21890871)
[»] chr7 (5 HSPs)
chr7 (139-197)||(31350594-31350652)
chr7 (139-201)||(38197923-38197985)
chr7 (141-201)||(16888316-16888377)
chr7 (141-187)||(36561537-36561583)
chr7 (146-194)||(29946806-29946854)
[»] chr8 (2 HSPs)
chr8 (139-187)||(1765021-1765069)
chr8 (145-201)||(1773476-1773532)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 42255384 - 42255621
Alignment:
Q  14 attattcttgttgtaacttttatttatttatttctaatggtaatggtaattgtaaaggtgacaaaagtgttgctataatcctaagaacatcttaaaaatg 113  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42255384 attattcttgttgtaactttt--ttatttatttctaatggtaatggtaattgtaaaggtgacaaaagtgttgctataatcctaagaacatcttaaaaatg 42255481  T
Q  114 ------gtaatgatatgtctcaaaggcataagttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaactttaactgt 207  Q
          ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  42255482 gtaatggtaatgatatgtctcaagggcacaagttaaggaatttaaaatataaataattgttttaaaaattgtgcattcaattttagtcaactttaactgt 42255581  T
Q  208 ggcacagttaagtggatgagcacagaccttgatccgatat 247  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  42255582 ggcatagttaagtggatgagcacagaccttgatccgatat 42255621  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 12434269 - 12434200
Alignment:
Q  132 ggcataagttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  12434269 ggcatatgttaatgaatttaaaatataaataattgtcttaaaagttgtgcattcaactttattcaacttt 12434200  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 7317190 - 7317263
Alignment:
Q  128 caaaggcataagttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||||||| | | |||||||||||||||| |||||| |||||||||| |||||||||||||| | |||||||||    
T  7317190 caaaggcacatgctaaggaatttaaaatagaaataaatgtcttaaaagttgtgcattcaattcttttcaacttt 7317263  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 26604111 - 26604166
Alignment:
Q  146 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    ||||||||||| |||||| ||| |||||| |||||| |||||| ||||||||||||    
T  26604111 aatttaaaatagaaataactgtattaaaagttgtgcgttcaatcttattcaacttt 26604166  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 44498273 - 44498341
Alignment:
Q  133 gcataagttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  44498273 gcatatgttaaggaatttaaaataaaaataattgtcttaaaagttgtgcattcaactttattcaacttt 44498341  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 42672730 - 42672786
Alignment:
Q  145 gaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  42672730 gaatttaaaatagaaataattgtcttaaaaattgtgcattcaactttattcaacttt 42672786  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 51290365 - 51290305
Alignment:
Q  141 taaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||    
T  51290365 taagaaatttaaaataaaaataattgtcttaaaagttgtgcattcaactttattaaacttt 51290305  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 47189573 - 47189513
Alignment:
Q  141 taaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||| ||||||||||| ||||| |||||| |||| |||||||||||| |||||||||||||    
T  47189573 taagaaatttaaaatagaaatagttgtctcaaaagttgtgcattcaactttattcaacttt 47189513  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 27064887 - 27064824
Alignment:
Q  139 gttaaggaatttaaaa-tataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||||| ||||||||| || |||||||||| ||||||||||||||||||| |||||| ||||||    
T  27064887 gttaagaaatttaaaaataaaaataattgttttaaaaattgtgcattcaactttattaaacttt 27064824  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 27085991 - 27085928
Alignment:
Q  139 gttaaggaatttaaaa-tataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||||| ||||||||| || |||||||||| ||||||||||||||||||| |||||| ||||||    
T  27085991 gttaagaaatttaaaaataaaaataattgttttaaaaattgtgcattcaactttattaaacttt 27085928  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 39262031 - 39262082
Alignment:
Q  146 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaa 197  Q
    ||||||||| | ||| |||||||||||||||||||||||||| |||||||||    
T  39262031 aatttaaaaaagaaacaattgtcttaaaaattgtgcattcaactttattcaa 39262082  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 53924587 - 53924643
Alignment:
Q  141 taaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaa 197  Q
    |||||||||||||||| |||||| || ||||||| |||||||||||| | |||||||    
T  53924587 taaggaatttaaaataaaaataaatgccttaaaagttgtgcattcaactctattcaa 53924643  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 25950419 - 25950351
Alignment:
Q  128 caaaggcataagttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaac 198  Q
    |||||||| | | |||| ||||||||||| |||||||||||| ||   |||||||||||||||||||||||    
T  25950419 caaaggcacatgctaagaaatttaaaatagaaataattgtctcaag--ttgtgcattcaattttattcaac 25950351  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 16284021 - 16283947
Alignment:
Q  127 tcaaaggcataagttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    ||||||||||| |||||  ||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||    
T  16284021 tcaaaggcatatgttaaaaaatttaaaatagaaataattgtcttaaaagttgtgcattcatctttattcaacttt 16283947  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 29865958 - 29866019
Alignment:
Q  140 ttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    ||||||||||||||||| |||||| ||| |||||| |||| |||||||||||||||||||||    
T  29865958 ttaaggaatttaaaatagaaataaatgtattaaaagttgtacattcaattttattcaacttt 29866019  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 43177638 - 43177699
Alignment:
Q  140 ttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    ||||||||||||||||| |||||| ||| |||||| ||||||||||||| ||||||||||||    
T  43177638 ttaaggaatttaaaatagaaataaatgtattaaaagttgtgcattcaatcttattcaacttt 43177699  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 44127581 - 44127521
Alignment:
Q  141 taaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||| ||||||||||| ||| | |||||| |||||||||| |||||| |||||||||||||    
T  44127581 taagaaatttaaaatagaaacatttgtctaaaaaattgtgtattcaactttattcaacttt 44127521  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 14195574 - 14195629
Alignment:
Q  132 ggcataagttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaa 187  Q
    |||||| | |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  14195574 ggcatatgctaaggaatttaaaatagaaataattgtcttaaaagttgtgcattcaa 14195629  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 19651953 - 19652011
Alignment:
Q  139 gttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaa 197  Q
    |||||||||||||||||| |||||||| |||||||| ||||| |||||| |||||||||    
T  19651953 gttaaggaatttaaaatagaaataattatcttaaaagttgtgtattcaactttattcaa 19652011  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 36473590 - 36473528
Alignment:
Q  139 gttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||||| ||||||||||| |||||||| |||||||| |||||||||||| |||||| ||||||    
T  36473590 gttaagaaatttaaaatagaaataattttcttaaaagttgtgcattcaactttatttaacttt 36473528  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 34137744 - 34137795
Alignment:
Q  146 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaa 197  Q
    ||||||||||| |||||||||| |||||| |||||||||||| |||||||||    
T  34137744 aatttaaaataaaaataattgttttaaaagttgtgcattcaactttattcaa 34137795  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 21890871 - 21890811
Alignment:
Q  141 taaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||| ||| ||||| | ||| |||||||| |||||||||||||| || |||||||||||||    
T  21890871 taagaaatataaaaaagaaaaaattgtctcaaaaattgtgcatttaactttattcaacttt 21890811  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 31350652 - 31350594
Alignment:
Q  139 gttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaa 197  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||| || |||||||||    
T  31350652 gttaaggaatttaaaatagaaataattatcttaaaaattctgcatttaactttattcaa 31350594  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 38197923 - 38197985
Alignment:
Q  139 gttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||||||||||||||||| |||||| |||||||||| |||| ||||||| | |||||||||||    
T  38197923 gttaaggaatttaaaataaaaataaatgtcttaaaagttgtacattcaaatctattcaacttt 38197985  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 16888316 - 16888377
Alignment:
Q  141 taaggaatttaaaatataaataattgtcttaaaaattgtgcattcaa-ttttattcaacttt 201  Q
    |||||||||||||||| |||||||| |||||||| |||| ||||||| || |||||||||||    
T  16888316 taaggaatttaaaataaaaataattctcttaaaagttgtacattcaacttgtattcaacttt 16888377  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 36561583 - 36561537
Alignment:
Q  141 taaggaatttaaaatataaataattgtcttaaaaattgtgcattcaa 187  Q
    |||| |||||||||||||||||| |||||||||| |||| |||||||    
T  36561583 taagaaatttaaaatataaataaatgtcttaaaagttgtacattcaa 36561537  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 29946806 - 29946854
Alignment:
Q  146 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttatt 194  Q
    ||||||||||| |||||||||| | ||||||| ||||||||| ||||||    
T  29946806 aatttaaaataaaaataattgtttaaaaaattatgcattcaactttatt 29946854  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 1765021 - 1765069
Alignment:
Q  139 gttaaggaatttaaaatataaataattgtcttaaaaattgtgcattcaa 187  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||||||    
T  1765021 gttaaggaatttaaaatagaaataaatgtcttaaaagttgtgcattcaa 1765069  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 1773476 - 1773532
Alignment:
Q  145 gaatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 201  Q
    |||||||||||| |||||| |||||||||  ||||||||||| || |||||||||||    
T  1773476 gaatttaaaatagaaataaatgtcttaaaggttgtgcattcatttctattcaacttt 1773532  T

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