View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_5 (Length: 576)
Name: NF1529_low_5
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 291 - 576
Target Start/End: Complemental strand, 33129512 - 33129228
Alignment:
| Q |
291 |
cgtcttggatattttctaaattgtttttcttctcaaaaaatggacagacgtctgcacacttgccacaataataaaattaataagcattaatgtttttctt |
390 |
Q |
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| T |
33129512 |
cgtcttggatattttctaaattgtttttcttctcaaaaaatggacagacgtctgcacacttgccacaataataaaatcaataagcattaatgtttttctt |
33129413 |
T |
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| Q |
391 |
tgagggagtattttatatatgtgacttatttcaattttttaagaatatatatgaaatcctttcaaaaaataatatacatgaaatctgatctgaaaataca |
490 |
Q |
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| T |
33129412 |
tgagggagtattttatatatgtgacttatttcaattttttaagaatatatatgaaatcctttcaaaaaataatatacatgaaatctgatctgaaaataca |
33129313 |
T |
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| Q |
491 |
caataaaattttattttgcgcagttttgnnnnnnnnnnnnnnnnttcgagtagccatttttattttaattgttttggatcacacac |
576 |
Q |
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| T |
33129312 |
caataaaattttattttgtgcagttttg-aaaagaaaaaaaaaattcgagtagccatttttattttaattgttttggatcacacac |
33129228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 33129673 - 33129576
Alignment:
| Q |
137 |
caataacaaaactttttccttaataaatat--ctatgactatatttcaagttgattccaaatgttggtatagcttcctaaaaataaattggtatagcc |
232 |
Q |
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| T |
33129673 |
caataacaaaactttttccttaataaatatatctatgactatatttcaagttgataccaaattttggtatagcttcctaaaaataaattggtatagcc |
33129576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 33129800 - 33129734
Alignment:
| Q |
10 |
ataattctatactgacgatgtatacaaactatattcaatataataagatctcgagttttggtaaaac |
76 |
Q |
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| T |
33129800 |
ataattgtatactgacgatgtatacaaattacattctatataataagatctcgagttttggtaaaac |
33129734 |
T |
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