View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1529_low_51 (Length: 243)

Name: NF1529_low_51
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1529_low_51
NF1529_low_51
[»] chr7 (6 HSPs)
chr7 (55-233)||(35941865-35942043)
chr7 (71-199)||(8988706-8988834)
chr7 (1-57)||(35941798-35941854)
chr7 (71-199)||(35967060-35967188)
chr7 (71-199)||(35988472-35988600)
chr7 (71-199)||(43585591-43585719)
[»] chr1 (1 HSPs)
chr1 (1-233)||(49212981-49213226)
[»] chr5 (1 HSPs)
chr5 (1-233)||(20331400-20331645)
[»] chr4 (1 HSPs)
chr4 (1-233)||(25431138-25431384)
[»] chr8 (1 HSPs)
chr8 (71-199)||(43444279-43444407)
[»] chr6 (1 HSPs)
chr6 (71-199)||(26256741-26256869)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 55 - 233
Target Start/End: Original strand, 35941865 - 35942043
Alignment:
Q  55 cggttttctgcaagaggaaatatatgttgagcaaccagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctatggc 154  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35941865 cggttttctgcaagaggagatatatgttgagcaaccagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctacggc 35941964  T
Q  155 ttaaagcaagcaccgagagtgtggtacaatagaattaatgatcatttgctgcatttgggcttccaaaagagcctctctg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35941965 ttaaagcaagcaccgagagtgtggtacaatagaattaatgatcatttgctgcatttaggcttccaaaagagcctctctg 35942043  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 8988706 - 8988834
Alignment:
Q  71 gaaatatatgttgagcaaccagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctatggcttaaagcaagcaccga 170  Q
    ||||||||||| ||||| || ||||| || ||| |  ||||| ||||||| ||||| ||  | || ||||||||||| ||||||||||| |||||||| |    
T  8988706 gaaatatatgtggagcagcctgatggattcgtggtgcaaggtaaagaagataaagtttatctactcaaaaaggctctttatggcttaaaacaagcaccaa 8988805  T
Q  171 gagtgtggtacaatagaattaatgatcat 199  Q
     ||  ||||||| ||| || |||||||||    
T  8988806 aagcttggtacagtaggataaatgatcat 8988834  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35941798 - 35941854
Alignment:
Q  1 tacttgccgttgttgcgcaaaaagggttgcaagtttttcatatggacgttaagtcgg 57  Q
    |||||| ||||||||| |||||||||| |  ||| ||||||||||||||||||||||    
T  35941798 tacttgtcgttgttgcacaaaaagggtggagagtgtttcatatggacgttaagtcgg 35941854  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 35967188 - 35967060
Alignment:
Q  71 gaaatatatgttgagcaaccagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctatggcttaaagcaagcaccga 170  Q
    ||||||||||| ||||| || || || || ||| |  ||||| ||||||| ||||| ||  | || ||||||||||| ||||||||||| |||||||| |    
T  35967188 gaaatatatgtggagcagcctgagggattcgtggtgcaaggtaaagaagataaagtttatctactcaaaaaggctctttatggcttaaaacaagcaccaa 35967089  T
Q  171 gagtgtggtacaatagaattaatgatcat 199  Q
    |||  ||||||| ||| || |||||||||    
T  35967088 gagcttggtacagtaggataaatgatcat 35967060  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 35988600 - 35988472
Alignment:
Q  71 gaaatatatgttgagcaaccagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctatggcttaaagcaagcaccga 170  Q
    ||||||||||| ||||| || || || || ||| |  ||||| ||||||| ||||| ||  | || ||||||||||| ||||||||||| |||||||| |    
T  35988600 gaaatatatgtggagcagcctgagggattcgtggtgcaaggtaaagaagataaagtttatctactcaaaaaggctctttatggcttaaaacaagcaccaa 35988501  T
Q  171 gagtgtggtacaatagaattaatgatcat 199  Q
    |||  ||||||| ||| || |||||||||    
T  35988500 gagcttggtacagtaggataaatgatcat 35988472  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 43585591 - 43585719
Alignment:
Q  71 gaaatatatgttgagcaaccagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctatggcttaaagcaagcaccga 170  Q
    ||||||||||| ||||| || ||||| || ||| |  ||||| ||||||| ||||| ||  | || ||||||||||| ||||||||||| |||||||| |    
T  43585591 gaaatatatgtggagcagcctgatggattcgtggtgcaaggtaaagaagataaagtttatctactcaaaaaggctctttatggcttaaaacaagcaccaa 43585690  T
Q  171 gagtgtggtacaatagaattaatgatcat 199  Q
     ||  ||||||| ||| || |||||||||    
T  43585691 aagcttggtacagtaggataaatgatcat 43585719  T

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Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 49212981 - 49213226
Alignment:
Q  1 tacttgccgttgttgcgcaaaaagggttgcaagtttttcatatggacgttaagtcgg-------------ttttctgcaagaggaaatatatgttgagca 87  Q
    |||||| ||||||||| |||||||||| |||||| ||||||||||||||||||||||             ||||||||||||||| ||| ||||||||||    
T  49212981 tacttgtcgttgttgcacaaaaagggtggcaagtgtttcatatggacgttaagtcggctttccttaacggttttctgcaagaggagatacatgttgagca 49213080  T
Q  88 accagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctatggcttaaagcaagcaccgagagtgtggtacaataga 187  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  49213081 accagatggttttgtgatcaaaggtcaagaagaaaaaggctacttgctaaaaaaggctctatacggcttaaagcaagcaccgagagtgtggtacaataga 49213180  T
Q  188 attaatgatcatttgctgcatttgggcttccaaaagagcctctctg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49213181 attaatgatcatttgctgcatttgggcttccaaaagagcctctctg 49213226  T

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Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 20331645 - 20331400
Alignment:
Q  1 tacttgccgttgttgcgcaaaaagggttgcaagtttttcatatggacgttaagtcgg-------------ttttctgcaagaggaaatatatgttgagca 87  Q
    |||||||||||||||| |||||||||| |  ||| ||||||||||||||||||||||             ||||||||||||||| ||||||||||||||    
T  20331645 tacttgccgttgttgcacaaaaagggtggagagtgtttcatatggacgttaagtcggctttccttaacggttttctgcaagaggagatatatgttgagca 20331546  T
Q  88 accagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctatggcttaaagcaagcaccgagagtgtggtacaataga 187  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  20331545 accagatggttttgtgatcaaaggtcaagaaaaaaaattctacttgctaaaaaaggctctctacggcttaaagcaagcaccaagagtgtggtacaataga 20331446  T
Q  188 attaatgatcatttgctgcatttgggcttccaaaagagcctctctg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20331445 attaatgatcatttgctgcatttgggcttccaaaagagcctctctg 20331400  T

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Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 25431138 - 25431384
Alignment:
Q  1 tacttgccgttgttgcgcaaaaagggttgcaagtttttcatatggacgttaagtcggttttc-------------tgcaagaggaaatatatgttgagca 87  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||| ||||             |||||||||| ||||||||||||||    
T  25431138 tacttgacgttgttgcacaaaaagggtggcaagtgtttcatatggacgttaagtcggctttccttaacggttttttgcaagaggagatatatgttgagca 25431237  T
Q  88 accagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaa-aaggctctctatggcttaaagcaagcaccgagagtgtggtacaatag 186  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||    
T  25431238 accatatggttctgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaaggctctctacggcttaaagcaaacaccaagagtgtggtacaatag 25431337  T
Q  187 aattaatgatcatttgctgcatttgggcttccaaaagagcctctctg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25431338 aattaatgatcatttgctgcatttgggcttccaaaagagcctctctg 25431384  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 43444279 - 43444407
Alignment:
Q  71 gaaatatatgttgagcaaccagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctatggcttaaagcaagcaccga 170  Q
    ||||||||||| ||||| || ||||| || ||| |  ||||| ||||||| ||||| ||  | || ||||||||||| ||||||||||| |||||||| |    
T  43444279 gaaatatatgtggagcagcctgatggattcgtggtgcaaggtaaagaagataaagtttatctactcaaaaaggctctttatggcttaaaacaagcaccaa 43444378  T
Q  171 gagtgtggtacaatagaattaatgatcat 199  Q
    |||  ||||||| ||| || |||||||||    
T  43444379 gagcttggtacagtaggataaatgatcat 43444407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 26256741 - 26256869
Alignment:
Q  71 gaaatatatgttgagcaaccagatggttttgtgatcaaaggtcaagaagaaaaagtctacttgctaaaaaaggctctctatggcttaaagcaagcaccga 170  Q
    ||||||||||| ||||| || || || || ||| |  ||||| ||||||| ||||| ||  | || ||||||||||| ||||||||||| |||||||| |    
T  26256741 gaaatatatgtggagcagcctgagggattcgtggtgcaaggtaaagaagataaagtttatctactcaaaaaggctctttatggcttaaaacaagcaccaa 26256840  T
Q  171 gagtgtggtacaatagaattaatgatcat 199  Q
    |||  ||||||| ||| || |||||||||    
T  26256841 gagcttggtacagtaggataaatgatcat 26256869  T

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