View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1529_low_54 (Length: 234)

Name: NF1529_low_54
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1529_low_54
NF1529_low_54
[»] chr1 (11 HSPs)
chr1 (4-77)||(9879304-9879377)
chr1 (145-219)||(9879445-9879519)
chr1 (156-213)||(37400292-37400349)
chr1 (161-220)||(50919977-50920036)
chr1 (156-218)||(2219990-2220052)
chr1 (148-209)||(40257409-40257470)
chr1 (161-213)||(9117142-9117194)
chr1 (148-220)||(17745250-17745322)
chr1 (148-220)||(21547474-21547546)
chr1 (161-213)||(24047103-24047155)
chr1 (161-213)||(31383799-31383851)
[»] chr5 (4 HSPs)
chr5 (148-213)||(30109309-30109374)
chr5 (181-220)||(29173533-29173572)
chr5 (181-218)||(8779306-8779343)
chr5 (156-220)||(16773825-16773889)
[»] chr7 (8 HSPs)
chr7 (148-216)||(48771948-48772016)
chr7 (148-220)||(33869439-33869511)
chr7 (162-213)||(7499925-7499976)
chr7 (148-218)||(45709704-45709774)
chr7 (163-207)||(18011356-18011400)
chr7 (161-213)||(26199532-26199584)
chr7 (148-220)||(26459404-26459476)
chr7 (148-220)||(30579345-30579417)
[»] scaffold0517 (1 HSPs)
scaffold0517 (156-213)||(7727-7784)
[»] chr6 (4 HSPs)
chr6 (148-213)||(32283786-32283851)
chr6 (148-218)||(32201881-32201951)
chr6 (156-218)||(33549122-33549184)
chr6 (148-213)||(24641191-24641256)
[»] scaffold0194 (1 HSPs)
scaffold0194 (148-218)||(13042-13112)
[»] chr8 (8 HSPs)
chr8 (147-213)||(35035296-35035362)
chr8 (149-218)||(968373-968442)
chr8 (148-213)||(28783070-28783135)
chr8 (148-218)||(3624590-3624660)
chr8 (148-218)||(8485009-8485079)
chr8 (148-213)||(16852350-16852415)
chr8 (148-213)||(19703488-19703553)
chr8 (180-220)||(16585482-16585522)
[»] chr2 (8 HSPs)
chr2 (148-213)||(7599982-7600047)
chr2 (148-213)||(37480085-37480150)
chr2 (173-219)||(33582008-33582054)
chr2 (147-220)||(11251096-11251169)
chr2 (156-213)||(21213787-21213844)
chr2 (148-213)||(39715002-39715067)
chr2 (148-220)||(3001389-3001461)
chr2 (149-213)||(12086130-12086194)
[»] chr3 (6 HSPs)
chr3 (148-219)||(2667872-2667943)
chr3 (156-218)||(21960569-21960631)
chr3 (162-220)||(27259185-27259243)
chr3 (163-220)||(10445133-10445190)
chr3 (148-213)||(19154641-19154706)
chr3 (156-220)||(29563918-29563982)
[»] scaffold0258 (1 HSPs)
scaffold0258 (156-218)||(15319-15381)
[»] chr4 (4 HSPs)
chr4 (152-210)||(17618295-17618353)
chr4 (148-220)||(27372651-27372723)
chr4 (148-220)||(37109345-37109417)
chr4 (148-192)||(46545721-46545765)
[»] scaffold0299 (1 HSPs)
scaffold0299 (151-220)||(11541-11610)
[»] scaffold0008 (1 HSPs)
scaffold0008 (161-218)||(49329-49386)
[»] scaffold0118 (1 HSPs)
scaffold0118 (148-220)||(41627-41699)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 9879304 - 9879377
Alignment:
Q  4 taagaaagtaattattcatacagtttttcacttccaaaaaataggtttacactatattcttgtaattaactact 77  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9879304 taagaaagtaattattcatacagtttttcaattccaaaaaataggtttacactatattcttgtaattaactact 9879377  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 9879445 - 9879519
Alignment:
Q  145 gaaggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctct 219  Q
    ||||||||||||||| ||||||||||| || |||| ||||| ||| || ||||||| |||| |||||||||||||    
T  9879445 gaaggttggcttggttgtattggcttgggatctgagagtgtactcttccttgaggtctcagattcgattatctct 9879519  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 37400292 - 37400349
Alignment:
Q  156 tggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||| |||||||||||||||||||||||||||||||| || |||| ||| ||||||||    
T  37400292 tggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaagttcgatt 37400349  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 50919977 - 50920036
Alignment:
Q  161 gtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    |||||| ||||| |||||| ||||||||| || || ||||||||||||||||| ||||||    
T  50919977 gtattgacttgaaacctgagagtgtgctcatccttaaggtttcaggttcgattctctctg 50920036  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 2219990 - 2220052
Alignment:
Q  156 tggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    |||| |||||||||||  ||||||||||||||| ||| | ||||| |||||||||||| ||||    
T  2219990 tggtggtattggcttggaacctgaaagtgtgcttctcctcgaggtctcaggttcgattctctc 2220052  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 40257409 - 40257470
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttc 209  Q
    ||||||| |||| ||||||||||||||||||  |||||||||||| | ||||| ||| ||||    
T  40257409 ggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttc 40257470  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 9117142 - 9117194
Alignment:
Q  161 gtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||| |||||| || ||| ||||||||||||| ||||||| ||||||||||||    
T  9117142 gtatgggcttgggatctggaagtgtgctcctccttgaggtctcaggttcgatt 9117194  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 17745322 - 17745250
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||| | || ||||||||||| |||||||  ||||||||||| | ||||| ||| |||||||| ||||||    
T  17745322 ggttggcctagtggtattggcttgggacctgagcgtgtgctcctcctcgaggtctcatgttcgattctctctg 17745250  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 21547546 - 21547474
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||| | || ||||||||||| ||| ||  || ||||||||| | |||||||||||||||||| ||||||    
T  21547546 ggttggcctagtggtattggcttgggacatgggagggtgctcctcctcgaggtttcaggttcgattctctctg 21547474  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 24047155 - 24047103
Alignment:
Q  161 gtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    ||||||||||||||| ||  |||||||||||| | ||||||||| ||||||||    
T  24047155 gtattggcttgagacttgggagtgtgctcctcctcgaggtttcaagttcgatt 24047103  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 31383851 - 31383799
Alignment:
Q  161 gtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    ||||||||||| ||||||  |||||||||||| ||| ||| ||||||||||||    
T  31383851 gtattggcttgggacctgggagtgtgctcctccttggggtctcaggttcgatt 31383799  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 30109374 - 30109309
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||||||||||| ||||||||||| ||||||  |||||||||||| ||||||| ||||||||||||    
T  30109374 ggttggcttggtggtattggcttgtgacctgggagtgtgctcctccttgaggtctcaggttcgatt 30109309  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 29173533 - 29173572
Alignment:
Q  181 agtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  29173533 agtgtgctcctcctcgaggtttcaggttcgattatctctg 29173572  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 8779343 - 8779306
Alignment:
Q  181 agtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    |||||||||||| | |||||||||||||||||||||||    
T  8779343 agtgtgctcctcctcgaggtttcaggttcgattatctc 8779306  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 16773825 - 16773889
Alignment:
Q  156 tggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    |||| |||||| |||| ||||||  |||||||||||| | ||||| |||||||||||| ||||||    
T  16773825 tggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctg 16773889  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 48771948 - 48772016
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatc 216  Q
    |||||||||||| ||||||||||| || |||  |||||||||||| ||||||| |||||||||||||||    
T  48771948 ggttggcttggtggtattggcttgggatctgggagtgtgctcctccttgaggtctcaggttcgattatc 48772016  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 33869511 - 33869439
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||  |  |||| || ||||||||| ||||||    
T  33869511 ggttggcctagtagtattggcttgagacctggaagtgtgctccttctcaaggtctctggttcgattctctctg 33869439  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 7499976 - 7499925
Alignment:
Q  162 tattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||||||||| ||||||| ||| |||||||||| ||||| ||||||||||||    
T  7499976 tattggcttgggacctgagagtttgctcctcttcgaggtctcaggttcgatt 7499925  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 45709774 - 45709704
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    ||||||| | || ||||| ||||| || |||| |||||||||||| | ||||| |||||||||||||||||    
T  45709774 ggttggcctagtggtattagcttgggatctgagagtgtgctcctcctcgaggtctcaggttcgattatctc 45709704  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 18011400 - 18011356
Alignment:
Q  163 attggcttgagacctgaaagtgtgctcctctttgaggtttcaggt 207  Q
    ||||||||||||||||| ||||||||||||  |||||| ||||||    
T  18011400 attggcttgagacctgagagtgtgctcctccatgaggtctcaggt 18011356  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 26199532 - 26199584
Alignment:
Q  161 gtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    ||||||||||| ||||||| | ||| |||||||||||| | ||||||||||||    
T  26199532 gtattggcttgggacctgagaatgtactcctctttgagatctcaggttcgatt 26199584  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 26459476 - 26459404
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||| | || ||||||||||| ||||||  |||||||||||| |  |||| |||||||||||| ||||||    
T  26459476 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctg 26459404  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 30579345 - 30579417
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||| |||| ||||||||||||||||||  ||||| | |||| |  |||| |||||||||||| ||||||    
T  30579345 ggttggcctggtggtattggcttgagacctgggagtgtccacctcctcaaggtctcaggttcgattttctctg 30579417  T

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Target: scaffold0517 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 7784 - 7727
Alignment:
Q  156 tggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||| |||||||||||||||||||||||||||||||| || |||| ||| ||||||||    
T  7784 tggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaagttcgatt 7727  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 32283851 - 32283786
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    ||||| |||| | |||||||||||||| |||||| | |||||||||| ||||||||||||||||||    
T  32283851 ggttgtcttgatggtattggcttgagatctgaaattatgctcctcttcgaggtttcaggttcgatt 32283786  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 32201951 - 32201881
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    ||||| |||||| ||||||||||| || || | |||||||||||| || | |||||| |||||||||||||    
T  32201951 ggttgacttggtggtattggcttgggatctcagagtgtgctcctcctttaagtttcaagttcgattatctc 32201881  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 33549122 - 33549184
Alignment:
Q  156 tggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    |||| ||||||||||| ||||||  |||||||||||| | ||||| |||||||||||| ||||    
T  33549122 tggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 33549184  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 24641256 - 24641191
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||||||||||| |||||| |||| || |||  |||||||||||| | ||||||| ||||||||||    
T  24641256 ggttggcttggtggtattgacttgggatctgggagtgtgctcctcctcgaggtttaaggttcgatt 24641191  T

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Target: scaffold0194 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 13112 - 13042
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    |||||||||||| |||||||||||||| |||  |||||||||||| |  |||| |||||||||||| ||||    
T  13112 ggttggcttggtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 13042  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 35035296 - 35035362
Alignment:
Q  147 aggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||||||| || | |||||||||||||| || |||||||||||||||||||||| ||| ||| ||||    
T  35035296 aggttggcctgttggtattggcttgagatctaaaagtgtgctcctctttgaggtctcatgttagatt 35035362  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 968373 - 968442
Alignment:
Q  149 gttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    |||||| |||| ||||||||||| ||||||  |||||||||||| | ||||| |||||||||||| ||||    
T  968373 gttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 968442  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 28783070 - 28783135
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||||||||||| ||||||||||||||||||  |||||||||||| |  |||| ||| ||||||||    
T  28783070 ggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgatt 28783135  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 3624590 - 3624660
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    ||||||| | || ||||||||||| ||||||  ||||||||||||||  |||| |||||||||||| ||||    
T  3624590 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctctc 3624660  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 8485009 - 8485079
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    ||||||| |||| ||||| ||||| ||||||  |||||||||||||||||||| |||  ||||||| ||||    
T  8485009 ggttggcctggtggtatttgcttgggacctgtgagtgtgctcctctttgaggtctcattttcgattctctc 8485079  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 16852350 - 16852415
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    ||||||| | || ||||||||||| ||||||  |||||||||||| | ||||| ||||||||||||    
T  16852350 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 16852415  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 19703553 - 19703488
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    ||||||| | || ||||||||||| ||||||| |||||||||||| |  |||| ||||||||||||    
T  19703553 ggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgatt 19703488  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 16585522 - 16585482
Alignment:
Q  180 aagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||||||||||| | |||||||| ||||||||||||||    
T  16585522 aagtgtgctcctcttcgtggtttcagcttcgattatctctg 16585482  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 7600047 - 7599982
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||||||||||| | ||||||||||||| | | |||||||||||| | ||||||||| ||||||||    
T  7600047 ggttggcttggtggcattggcttgagacttaagagtgtgctcctcctcgaggtttcatgttcgatt 7599982  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 37480085 - 37480150
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    ||||||| |||| ||||||||||| ||||||| |||||||||||| |  |||| ||||||||||||    
T  37480085 ggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgatt 37480150  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 33582008 - 33582054
Alignment:
Q  173 gacctgaaagtgtgctcctctttgaggtttcaggttcgattatctct 219  Q
    ||||||| |||||||||||| ||||||| |||||||||||| |||||    
T  33582008 gacctgagagtgtgctcctccttgaggtctcaggttcgattctctct 33582054  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 11251096 - 11251169
Alignment:
Q  147 aggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    |||||||||| || ||||||||||| ||| || ||||||||||||| |  |||| ||||||| |||| ||||||    
T  11251096 aggttggcttagtggtattggcttgggacttggaagtgtgctcctcctcaaggtctcaggtttgattctctctg 11251169  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 21213787 - 21213844
Alignment:
Q  156 tggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||| ||||||||||| ||||||  |||||| ||||| ||||||| ||||||||||||    
T  21213787 tggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgatt 21213844  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 39715002 - 39715067
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    ||||||| |||| |||||| |||| ||||||  |||||||||||| | ||||| ||||||||||||    
T  39715002 ggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 39715067  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 3001389 - 3001461
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||| | || |||||| ||||||| ||   |||||||||||| ||||| | |||||||||||||||||||    
T  3001389 ggttggcctagtggtattgacttgagatctaggagtgtgctcctccttgagatctcaggttcgattatctctg 3001461  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 12086194 - 12086130
Alignment:
Q  149 gttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    |||||| |||| ||||||||||| |||||| ||||||||||||| |  |||| || |||||||||    
T  12086194 gttggcctggtggtattggcttgggacctggaagtgtgctcctcctcaaggtctcgggttcgatt 12086130  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 2667872 - 2667943
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctct 219  Q
    ||||||| |||| ||||||||||| || |||  ||||||||| || | ||||| ||||||||||||||||||    
T  2667872 ggttggcctggtggtattggcttgggatctgggagtgtgctcttcctcgaggtctcaggttcgattatctct 2667943  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 21960569 - 21960631
Alignment:
Q  156 tggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    |||| ||||||||||| ||||||| |||||||||||| | ||||| |||| ||||||| ||||    
T  21960569 tggtggtattggcttgggacctgagagtgtgctcctcctcgaggtctcagattcgattctctc 21960631  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 27259185 - 27259243
Alignment:
Q  162 tattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    |||||||||| ||||||  |||||||||||| | ||||||||||||| |||| ||||||    
T  27259185 tattggcttgggacctgggagtgtgctcctcctcgaggtttcaggtttgattctctctg 27259243  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 10445190 - 10445133
Alignment:
Q  163 attggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||||| ||||||  |||||||||||| | ||||| |||||||||||| ||||||    
T  10445190 attggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctg 10445133  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 19154641 - 19154706
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgatt 213  Q
    ||||||| | || ||||||||||||| ||||| |||||||||||| |  |||| ||||||||||||    
T  19154641 ggttggcctagttgtattggcttgaggcctgagagtgtgctcctcctaaaggtctcaggttcgatt 19154706  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 29563918 - 29563982
Alignment:
Q  156 tggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    |||| |||||||||||||| ||| ||||||||| ||| | || || |||||||||||| ||||||    
T  29563918 tggtggtattggcttgagatctggaagtgtgcttctcctcgaagtctcaggttcgattctctctg 29563982  T

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Target: scaffold0258 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 15381 - 15319
Alignment:
Q  156 tggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    |||| ||||||||||| ||||||  |||||||||||| | ||||| |||||||||||| ||||    
T  15381 tggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 15319  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 17618295 - 17618353
Alignment:
Q  152 ggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcg 210  Q
    |||||||| ||||||||||||||||||  |||||||||||| | ||||| ||| |||||    
T  17618295 ggcttggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcatgttcg 17618353  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 27372723 - 27372651
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||| | |||||||||| |||| || ||  | ||||||||||||| |||| | |||||||||||||||||    
T  27372723 ggttggcctagtagtattggtttgaaacttgggaatgtgctcctctttaaggtcttaggttcgattatctctg 27372651  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 37109417 - 37109345
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||| | || ||||||||||| ||||||  |||||||||||| |  |||| |||||||||||| ||||||    
T  37109417 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctg 37109345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 46545721 - 46545765
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctc 192  Q
    ||||||| | || ||||||||||||||||||| ||||||||||||    
T  46545721 ggttggcctagtggtattggcttgagacctgagagtgtgctcctc 46545765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 11541 - 11610
Alignment:
Q  151 tggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    |||| |||| ||||||||||| || |||  |||||||||||| | ||||| |||||||||||| ||||||    
T  11541 tggcctggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctctctg 11610  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 49329 - 49386
Alignment:
Q  161 gtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctc 218  Q
    ||||||||||| ||  ||| |||||||||||||| ||||| |||||||||||| ||||    
T  49329 gtattggcttgggatttgagagtgtgctcctcttcgaggtatcaggttcgattctctc 49386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 41699 - 41627
Alignment:
Q  148 ggttggcttggtagtattggcttgagacctgaaagtgtgctcctctttgaggtttcaggttcgattatctctg 220  Q
    ||||||| | || |||||||||||||| |||| ||| |||||||| | ||||| |||||||| ||| ||||||    
T  41699 ggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcaggttcaattctctctg 41627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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