View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_57 (Length: 225)
Name: NF1529_low_57
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 6037525 - 6037313
Alignment:
| Q |
1 |
cgtctaacttctataaccatcatcgctaacttctacaaagctagtaaatctgttagttgaactaagacagagcgaatgaagtttcatcctccaatattat |
100 |
Q |
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| T |
6037525 |
cgtctaaattctataaccatcatcactaacttctacaaagctagtaaatctgttagttgaacta-gacagagcgaataaagtttcatcctccaatattat |
6037427 |
T |
|
| Q |
101 |
tcccttatcattcttcgttatttcc---nnnnnnnnccctgcggaagaaattggatactctgaactccaagatgaaaatccagtaattattgaagtccat |
197 |
Q |
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| T |
6037426 |
tcccttatcattcttcgttatttcctttttttttttccctgcggaagaaattggatactctgaactccaagatgaaaatccagtaattattgaagtccat |
6037327 |
T |
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| Q |
198 |
ttgccacaacaact |
211 |
Q |
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|||||||||||||| |
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| T |
6037326 |
ttgccacaacaact |
6037313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 40842959 - 40842893
Alignment:
| Q |
141 |
gaagaaattggatactctgaactccaagatgaaaatccagtaattattgaagtccatttgccacaac |
207 |
Q |
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||||||||||||| | |||| |||||||||||||| |||||||||||||||| ||| |||||||| |
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| T |
40842959 |
gaagaaattggattttgtgaattccaagatgaaaattcagtaattattgaagtagattcgccacaac |
40842893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 31475577 - 31475528
Alignment:
| Q |
141 |
gaagaaattggatactctgaactccaagatgaaaatccagtaattattga |
190 |
Q |
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||||||||||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
31475577 |
gaagaaattggattatctgaattccaagatgaaaattcagtaattattga |
31475528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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