View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1529_low_6 (Length: 540)
Name: NF1529_low_6
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 523
Target Start/End: Complemental strand, 52590684 - 52590175
Alignment:
| Q |
14 |
atgaactgcaatttttcatctggaaatacactccaaggtaattataaattggaagaagagtcacgagacaatgtacagattattgctagtgatcatagtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
52590684 |
atgaactgcaatttttcatctggaaatacactccaaggtaataataaattggaagaagagtcacaagacaatgtacaaattattgatagtgatcatagtg |
52590585 |
T |
|
| Q |
114 |
tacaacaagcctcttccactagagaacatgtagnnnnnnntgtgatagattgtggaaatggaaaattgcatggtaaccaaaggctcagcataaaaagtgg |
213 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52590584 |
tacaaaaagcctcttccactagaaaacatgtagaaaaaaatgtgatagattgtggaaatggaaaattgcatggtaaccaaaggctcagcataaaaagtgg |
52590485 |
T |
|
| Q |
214 |
cttttattcacaaatagattctgattctgccacatatgatttaacagagttgggtaactttacaactgtggagagtggtggccacaacaatgtctctctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52590484 |
cttttattcacaaatagattctgattctgccacatatgatttaacagagttgggtaactttacaactgtggagagtggtggccacaacaatgtctctctt |
52590385 |
T |
|
| Q |
314 |
gcattggagttgagaaactgtgaaagcgatggattagccacatctgatgacgatgccattcataaaagacnnnnnnnnnnnnnnnnncagacattggttt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52590384 |
gcattggagttgagaaactgtgaaagcgatggattagccacatctgatgacgatgccattcataaaagacataataataataataatcagacattggttt |
52590285 |
T |
|
| Q |
414 |
cttcttcacagagtactgatttactagactatcatttcacagattcaggaaagcaacaacacatgtttggcaatactcatctgttgcatgaatttgtcgt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52590284 |
cttcttcacagagtactgatttactagactatcatttcacagattcaggaaagcaacaacacatgtttggcaatactcatctgttgcatgaatttgtcgt |
52590185 |
T |
|
| Q |
514 |
atgaaaatct |
523 |
Q |
| |
|
|||||||||| |
|
|
| T |
52590184 |
atgaaaatct |
52590175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 510
Target Start/End: Complemental strand, 7301149 - 7301066
Alignment:
| Q |
427 |
tactgatttactagactatcatttcacagattcaggaaagcaacaacacatgtttggcaatactcatctgttgcatgaatttgt |
510 |
Q |
| |
|
||||||||| |||||||||| |||||||| | |||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |
|
|
| T |
7301149 |
tactgatttgttagactatcacttcacagacactggaaagcaacaacacaagtttgccaaccctcatttgttacatgagtttgt |
7301066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 7301255 - 7301210
Alignment:
| Q |
303 |
atgtctctcttgcattggagttgagaaactgtgaaagcgatggatt |
348 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||| |||||||| |
|
|
| T |
7301255 |
atgtctcacttgcattggagttgaggaactctgaaagtgatggatt |
7301210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University