View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_60 (Length: 219)
Name: NF1529_low_60
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 39031454 - 39031632
Alignment:
| Q |
23 |
taagaaaaaaggaaggctgaggaaggagcagctaaagcaagtcatgagtaaacaatcgaaggagcagctgtaggcgacttagttgaaaattccaatccgt |
122 |
Q |
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| T |
39031454 |
taagaaaaaaggaaggctgaggaaggagcagctaaagcaagtcatgagtaaacaatcgaaggagcagctgtaggcgacttagttgaaaattccaatccgt |
39031553 |
T |
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| Q |
123 |
ggctgctgattctgatccatccatatctggagtaaacatctacatctgatactgaaaatgacgaaaattctgctcattt |
201 |
Q |
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| T |
39031554 |
ggctgctgattctgatccatccatatttggagtaaacatctacatctaatactgaaaatgacgaaaattctgctcattt |
39031632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 39026814 - 39026875
Alignment:
| Q |
97 |
cgacttagttgaaaattcc-aatccgtggctgctgattctgatccatccatatctggagtaa |
157 |
Q |
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| T |
39026814 |
cgacttagttaaaaattcccaatctgtggctgatgatactgatccatctatatctggagtaa |
39026875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 39026732 - 39026768
Alignment:
| Q |
24 |
aagaaaaaaggaaggctgaggaaggagcagctaaagc |
60 |
Q |
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| T |
39026732 |
aagaaaaaaggaaggccgaggaagcagcagctaaagc |
39026768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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