View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_61 (Length: 218)
Name: NF1529_low_61
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_61 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 35941414 - 35941626
Alignment:
| Q |
6 |
accttaaagaaacagtagctgatccaccaattcgaggcacaagactagtctctaacatctatcaaagaagcaatgtagcagtgtgtaacatagctgtatt |
105 |
Q |
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||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35941414 |
accttgaagaaacagtagatgatccaccaattcgaggaacaagactagtttctaacatctatcaaagaagcaatgtagcagtgtgtaacatagctgtatt |
35941513 |
T |
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| Q |
106 |
tgaaccagctagttttgaagaagctgttatggaggcaaaatggttagctgcgatgaaataggagctctccatgatcgagaaaaaccaaacatgggagttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35941514 |
tgaaccagctagttttgaagaagctgttatggaggcgaaatggttagctgcaatgaaagaggagctctccatgatcgagaaaaaccaaacatgggagttg |
35941613 |
T |
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| Q |
206 |
gttcccagacctc |
218 |
Q |
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| T |
35941614 |
gttccaagacctc |
35941626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 25430754 - 25430966
Alignment:
| Q |
6 |
accttaaagaaacagtagctgatccaccaattcgaggcacaagactagtctctaacatctatcaaagaagcaatgtagcagtgtgtaacatagctgtatt |
105 |
Q |
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||||| |||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25430754 |
accttgaagaaacagtagatgatccaccaattcaaggcacaagattagtctctgacatctatcaaagaagcaatgtagcagtgtgtaacatagctgtatt |
25430853 |
T |
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| Q |
106 |
tgaaccagctagttttgaagaagctgttatggaggcaaaatggttagctgcgatgaaataggagctctccatgatcgagaaaaaccaaacatgggagttg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
25430854 |
tgaaccagctagttttgaagaagctgttatggaggcaaaatggttagttgcgatgaaagatgagctctccatgatcgagaaaaaccaaacatgggagttg |
25430953 |
T |
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| Q |
206 |
gttcccagacctc |
218 |
Q |
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| T |
25430954 |
gttccaagacctc |
25430966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 20332029 - 20331817
Alignment:
| Q |
6 |
accttaaagaaacagtagctgatccaccaattcgaggcacaagactagtctctaacatctatcaaagaagcaatgtagcagtgtgtaacatagctgtatt |
105 |
Q |
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||||| |||||| ||||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20332029 |
accttgaagaaatagtagatgatccaccaattcgaggaacaagactagtttctgacatctatcaaagaagcaatgtagcagtgtgtaacatagctgtatt |
20331930 |
T |
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| Q |
106 |
tgaaccagctagttttgaagaagctgttatggaggcaaaatggttagctgcgatgaaataggagctctccatgatcgagaaaaaccaaacatgggagttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20331929 |
tgaaccagctagttttgaagaagctgttatggaggcgaaatggttagctgcaatgaaagaggagctctccatgatcgagaaaaaccaaacatgggagttg |
20331830 |
T |
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| Q |
206 |
gttcccagacctc |
218 |
Q |
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||||| ||||||| |
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| T |
20331829 |
gttccaagacctc |
20331817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 49212686 - 49212809
Alignment:
| Q |
95 |
atagctgtatttgaaccagctagttttgaagaagctgttatggaggcaaaatggttagctgcgatgaaataggagctctccatgatcgagaaaaaccaaa |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
49212686 |
atagctgtatttgaaccagctagttttgaagaagctgttatggaggcgaaatggttagctgcaatgaaagaggagctctccatgatcgagaaaaaccaaa |
49212785 |
T |
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| Q |
195 |
catgggagttggttcccagacctc |
218 |
Q |
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||||||| |||||||| ||||||| |
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| T |
49212786 |
catgggatttggttccaagacctc |
49212809 |
T |
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