View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_low_67 (Length: 204)
Name: NF1529_low_67
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 42255740 - 42255599
Alignment:
| Q |
25 |
ctatcaaactctgagttagactttacacttcaaactctgaccaatactaaaacattggagaaatttgaaaaagccaacataatccaatcttcctcttgta |
124 |
Q |
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| T |
42255740 |
ctatcaaactcttagttagactttacacttcaaactctgaccaatactaaaacactggagaaatttgaaaaagccaacataattcaatctcccttttgta |
42255641 |
T |
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| Q |
125 |
tttttctcaccttcagttaatatcggatcaaggtctgtgctc |
166 |
Q |
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| T |
42255640 |
tttttctcaccttcagttgatatcggatcaaggtctgtgctc |
42255599 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 21538043 - 21538092
Alignment:
| Q |
91 |
gaaaaagccaacataatccaatcttcct-cttgtatttttctcaccttca |
139 |
Q |
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| T |
21538043 |
gaaaaagcaaacacaattcaatcttccttcttgtatttttctcaccttca |
21538092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 11130002 - 11129949
Alignment:
| Q |
85 |
aaatttgaaaaagccaacataatccaatcttcctcttgtatttttctcaccttc |
138 |
Q |
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| T |
11130002 |
aaatttgaaaaagccaacgcaattcaaccatcttcttgtatttttctcaccttc |
11129949 |
T |
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