View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15300_high_1 (Length: 215)
Name: NF15300_high_1
Description: NF15300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15300_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 25866905 - 25866763
Alignment:
| Q |
61 |
cctgcaaaatatccccagtttactacaagttgtttgtaattgttgtagttttattttgaaggattattttactcctatat---atat-ttaccattcatg |
156 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
25866905 |
cctgcaaaatatcccaagtttactacaagttgtttgtaattattgtagttttattttgaaggattattttactcctatatgagctatattaccattcatg |
25866806 |
T |
|
| Q |
157 |
tcaaagcatgttatgagaaaaacatgattttac-tcgtattta |
198 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
25866805 |
tcaaagcatgttatgagaaaaacgtgattttacttcgtattta |
25866763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 25850481 - 25850430
Alignment:
| Q |
87 |
aagttgtttgtaattgttgtagttttattttgaaggattattttactcctat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25850481 |
aagttgtttgtaattgttgtagttttattttgaagcattattttactcctat |
25850430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 25867346 - 25867312
Alignment:
| Q |
37 |
ggtcaaaaaaggtaactacaatgtcctgcaaaata |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25867346 |
ggtcaaaaaaggtaactacaatgtcctgcaaaata |
25867312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University