View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15301_high_10 (Length: 217)
Name: NF15301_high_10
Description: NF15301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15301_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 38184865 - 38185049
Alignment:
| Q |
19 |
ggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaa |
118 |
Q |
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| T |
38184865 |
ggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaa |
38184964 |
T |
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| Q |
119 |
agtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
203 |
Q |
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| T |
38184965 |
agtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
38185049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 38180196 - 38180380
Alignment:
| Q |
19 |
ggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaa |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38180196 |
ggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaa |
38180295 |
T |
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| Q |
119 |
agtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
203 |
Q |
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| T |
38180296 |
agtaataatagtagatatcaaaaactgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
38180380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 38170382 - 38170563
Alignment:
| Q |
19 |
ggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaa |
118 |
Q |
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|||||||| || |||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
38170382 |
ggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatgaa |
38170481 |
T |
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| Q |
119 |
agtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctt |
200 |
Q |
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||||||||||| | |||||||| |||||||| ||||||||||| || || | ||||||||||||||||||| |||||||||| |
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| T |
38170482 |
agtaataatagaatatatcaaacaccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgccacctt |
38170563 |
T |
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