View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15301_high_11 (Length: 215)
Name: NF15301_high_11
Description: NF15301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15301_high_11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 38180697 - 38180483
Alignment:
| Q |
1 |
cactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcg |
100 |
Q |
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| T |
38180697 |
cactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcg |
38180598 |
T |
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| Q |
101 |
ccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacc |
200 |
Q |
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| T |
38180597 |
ccttaccaacaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacc |
38180498 |
T |
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| Q |
201 |
tacgagtatgagctt |
215 |
Q |
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||||||||||||||| |
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| T |
38180497 |
tacgagtatgagctt |
38180483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 38185366 - 38185174
Alignment:
| Q |
1 |
cactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcg |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
38185366 |
cactacacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttacacactgg |
38185267 |
T |
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| Q |
101 |
ccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactt |
193 |
Q |
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| T |
38185266 |
ccttatcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacgaagactt |
38185174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 38170883 - 38170729
Alignment:
| Q |
1 |
cactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcg |
100 |
Q |
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||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||| |
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| T |
38170883 |
cactacaaggtcacataaaccctgccctccaattcaccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttatacagtcg |
38170784 |
T |
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| Q |
101 |
ccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggc |
155 |
Q |
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||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
38170783 |
ccttatcaacaaaccaaccatcccgggcctctccttcgccaccttctctgacggc |
38170729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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