View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15301_high_5 (Length: 286)
Name: NF15301_high_5
Description: NF15301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15301_high_5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 26722149 - 26722433
Alignment:
| Q |
2 |
tgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatctttgcgtgatctgtaaatccatattactttttggtttcttttc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26722149 |
tgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatctttgcgtaatctgtaaatccatattactttttgctttcttttc |
26722248 |
T |
|
| Q |
102 |
aattgaaattttcagtttctgagtagctattgattccaattatttcatttctttatcttgcagaaaaattgccaaatccaggaggaaaatcatgttacgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722249 |
aattgaaattttcagtttctgagtagctattgattccaattatttcatttctttatcttgcagaaaaattgccaaatccaggaggaaaatcatgttacgt |
26722348 |
T |
|
| Q |
202 |
aagtcattcttttataatattgcacatgtagttgtgtatctatgcatgaaagagtggtacaagttgcataaaatgttgtatttta |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722349 |
aagtcattcttttataatattgcacatgtagttgtgtatctatgcataaaagagtggtacaagttgcataaaatgttgtatttta |
26722433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 2987605 - 2987887
Alignment:
| Q |
2 |
tgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatctttgcgtgatctgtaaatccatattactttttggtttcttttc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||| || |
|
|
| T |
2987605 |
tgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatcttttcgtaatctgtaaatgcatgttactttttggtttcttctc |
2987704 |
T |
|
| Q |
102 |
aattgaaattttcagtttctgagtagctattgattccaattatttcatttctttatcttgcagaaaaattgccaaatccaggaggaaaatcatgttacgt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
2987705 |
aattgaaattttcagtttctgagtagctattgatttcaattatttcatttctttatcttgcagaaaaattgccaaatccaggaggaaattcatgtta-gt |
2987803 |
T |
|
| Q |
202 |
aagtcattcttttataatattgcacatgtagttgtgtatctatgcatgaaagagtggtacaagttgcataaaatgttgtatttt |
285 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
2987804 |
aagtcattcttttataatattgtacatgtagttgtgtatctaggcttgaaagattggtacaagttgcataaaatgttatatttt |
2987887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 45116773 - 45116491
Alignment:
| Q |
2 |
tgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatctttgcgtgatctgtaaatccatattactttttggtttcttttc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||| || |
|
|
| T |
45116773 |
tgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatcttttcgtaatctgtaaatgcatgttactttttggtttcttctc |
45116674 |
T |
|
| Q |
102 |
aattgaaattttcagtttctgagtagctattgattccaattatttcatttctttatcttgcagaaaaattgccaaatccaggaggaaaatcatgttacgt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
45116673 |
aattgaaattttcagtttctgagtagctattgatttcaattatttcatttctttatcttgcagaaaaattgccaaatccaggaggaaattcatgtta-gt |
45116575 |
T |
|
| Q |
202 |
aagtcattcttttataatattgcacatgtagttgtgtatctatgcatgaaagagtggtacaagttgcataaaatgttgtatttt |
285 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45116574 |
aagtcattcttttataatattgtacatgcagttgtgtatctaggcttgaaagagtggtacaagttgcataaaatgttatatttt |
45116491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University