View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15301_high_9 (Length: 220)

Name: NF15301_high_9
Description: NF15301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15301_high_9
NF15301_high_9
[»] chr6 (1 HSPs)
chr6 (1-198)||(9573677-9573874)
[»] chr2 (2 HSPs)
chr2 (1-202)||(5276503-5276704)
chr2 (94-150)||(36476648-36476704)
[»] chr4 (5 HSPs)
chr4 (1-202)||(55159876-55160077)
chr4 (113-202)||(47198643-47198732)
chr4 (113-190)||(28683557-28683634)
chr4 (77-196)||(43737637-43737756)
chr4 (94-150)||(47523309-47523365)
[»] chr1 (4 HSPs)
chr1 (23-202)||(37874102-37874280)
chr1 (67-192)||(35615814-35615939)
chr1 (67-202)||(48869807-48869942)
chr1 (95-196)||(17496065-17496166)
[»] chr8 (12 HSPs)
chr8 (76-202)||(39255636-39255762)
chr8 (76-204)||(44751644-44751772)
chr8 (113-202)||(1365867-1365956)
chr8 (113-202)||(61492-61581)
chr8 (94-150)||(12351809-12351865)
chr8 (77-196)||(217154-217273)
chr8 (77-196)||(693714-693833)
chr8 (77-196)||(697923-698042)
chr8 (77-196)||(730777-730896)
chr8 (77-196)||(854672-854791)
chr8 (96-161)||(26492111-26492176)
chr8 (96-141)||(4627034-4627079)
[»] chr3 (2 HSPs)
chr3 (67-202)||(17227006-17227139)
chr3 (96-179)||(4486528-4486611)
[»] chr5 (2 HSPs)
chr5 (113-201)||(13655581-13655669)
chr5 (96-179)||(4909575-4909658)
[»] scaffold1037 (1 HSPs)
scaffold1037 (77-201)||(2068-2192)
[»] scaffold1031 (1 HSPs)
scaffold1031 (77-201)||(2186-2310)
[»] chr7 (1 HSPs)
chr7 (135-183)||(19737901-19737949)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 9573874 - 9573677
Alignment:
Q  1 aaaaagaacaagagaagcgtcgggggtgctgggaagaaaaattcagtgaaatgtgtaaagatatggaagatgaatagtgggtgagagaggcatgtgagag 100  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9573874 aaaaagaacaagagaagagtcaggggtgctgggaagaaaaattcagtgaaatgtgtaaagatatggaagatgaatagtgggtgagagaggcatgtgagag 9573775  T
Q  101 aaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaagactttcc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9573774 aaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttctttgtatgatccaatgattagaaaagactttcc 9573677  T

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Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 5276704 - 5276503
Alignment:
Q  1 aaaaagaacaagagaagcgtcgggggtgctgggaagaaaaattcagtgaaatgtgtaaagatatggaagatgaatagtgggtgagagaggcatgtgagag 100  Q
    ||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  5276704 aaaaagaacaagagaagagtcagggatgccgggaagaaaaactcagtgaaatgtgtaaagaaatggaagatgaatagtgggtgacagaggcatgtgagag 5276605  T
Q  101 aaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaagactttccca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5276604 aaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttctttgtatgatccaatgattagaaaagactttccca 5276505  T
Q  201 tg 202  Q
    ||    
T  5276504 tg 5276503  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 36476648 - 36476704
Alignment:
Q  94 gtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactat 150  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||| | |||||||||    
T  36476648 gtgagagagagtggttggagaagatagtaaaataaaaatctagtgataagagactat 36476704  T

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Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 55159876 - 55160077
Alignment:
Q  1 aaaaagaacaagagaagcgtcgggggtgctgggaagaaaaattcagtgaaatgtgtaaagatatggaagatgaatagtgggtgagagaggcatgtgagag 100  Q
    ||||||||||||||||| |||  |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55159876 aaaaagaacaagagaagagtcatgggtgccgagaagaaaaattcactgaaatgtgtaaagatatggaagatgaatagtgggtgagagaggcatgtgagag 55159975  T
Q  101 aaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaagactttccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||    
T  55159976 aaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttatatgatccaatgattagaaaagactttccca 55160075  T
Q  201 tg 202  Q
    ||    
T  55160076 tg 55160077  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 47198732 - 47198643
Alignment:
Q  113 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaagactttcccatg 202  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||    
T  47198732 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttcccatg 47198643  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 28683634 - 28683557
Alignment:
Q  113 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaa 190  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||    
T  28683634 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgcgttctttgtatgatccaatggttagaaaa 28683557  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 43737756 - 43737637
Alignment:
Q  77 gtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatc 176  Q
    ||||||||||||| ||||||||| | |||||||||  |||||||||| ||||||||| |||||| |||| |||| |||| |||||||| ||| |||||||    
T  43737756 gtgggtgagagagacatgtgagatagagtggttggaaaagatagtaatataaaaatccagtgttaagaggctatagtaatagtgtgttctttatatgatc 43737657  T
Q  177 caatgattagaaaagacttt 196  Q
    |||| |||| |||| |||||    
T  43737656 caataattataaaacacttt 43737637  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 47523365 - 47523309
Alignment:
Q  94 gtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactat 150  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||| | |||||||||    
T  47523365 gtgagagagagtggttggagaagatagtaaaataaaaatctagtgataagagactat 47523309  T

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Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 37874280 - 37874102
Alignment:
Q  23 ggggtgctgggaagaaaaattcagtgaaatgtgtaaagatatggaagatgaatagtgggtgagagaggcatgtgagagaaagtggttggggaagatagta 122  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37874280 ggggtgccgagaagaaaaattcagt-aaatgtgtaaagatatggaagatgaatagtgggtgagagaggcatgtgagagaaagtggttggggaagatagta 37874182  T
Q  123 agataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaagactttcccatg 202  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||    
T  37874181 agataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagtaaagactttcccatg 37874102  T

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Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 67 - 192
Target Start/End: Complemental strand, 35615939 - 35615814
Alignment:
Q  67 aagatgaatagtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttat 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  35615939 aagatgaatagtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttct 35615840  T
Q  167 ttgtatgatccaatgattagaaaaga 192  Q
    ||||||||||||||||||||||||||    
T  35615839 ttgtatgatccaatgattagaaaaga 35615814  T

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Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 48869942 - 48869807
Alignment:
Q  67 aagatgaatagtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttat 166  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |    
T  48869942 aagatgaatagtgggtgaaagaggcatgtgagagaaagtggttggggaagatagtatgataaaaatctagtgttgagagactattgtaatagtgtgttct 48869843  T
Q  167 ttgtatgatccaatgattagaaaagactttcccatg 202  Q
    |||||||||||||||||||||||||| |||||||||    
T  48869842 ttgtatgatccaatgattagaaaagattttcccatg 48869807  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 17496065 - 17496166
Alignment:
Q  95 tgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaagact 194  Q
    ||||||| || | |||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||| |||||||||||||||| |||| |||    
T  17496065 tgagagagagcgattggagaagatagtaagataataatctagtgtggagagactattgtaatagtgtgttctttatatgatccaatgattaaaaaacact 17496164  T
Q  195 tt 196  Q
    ||    
T  17496165 tt 17496166  T

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Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 39255636 - 39255762
Alignment:
Q  76 agtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgat 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  39255636 agtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgat 39255735  T
Q  176 ccaatgattagaaaagactttcccatg 202  Q
    ||||||||||| |||||||||||||||    
T  39255736 ccaatgattaggaaagactttcccatg 39255762  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 44751772 - 44751644
Alignment:
Q  76 agtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgat 175  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  44751772 agtggatgagagaggcatgtgagagaaagtgattggggaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgat 44751673  T
Q  176 ccaatgattagaaaagactttcccatgat 204  Q
    |||||||||| ||||||||||||||||||    
T  44751672 ccaatgattaaaaaagactttcccatgat 44751644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 1365956 - 1365867
Alignment:
Q  113 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaagactttcccatg 202  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  1365956 gaagatagtaagataagaatctagtgttgagagactattgtaacagtgtgttctttgtatgatccaatggttagaaaagactttcccatg 1365867  T

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Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 61581 - 61492
Alignment:
Q  113 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaagactttcccatg 202  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||    
T  61581 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttcccatg 61492  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 12351809 - 12351865
Alignment:
Q  94 gtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactat 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12351809 gtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactat 12351865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 217154 - 217273
Alignment:
Q  77 gtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatc 176  Q
    ||||||||||||| ||||||||| | |||||||||  |||||||||| ||||||||| ||| || ||| ||||| |||| ||| |||| ||  |||||||    
T  217154 gtgggtgagagagacatgtgagatagagtggttggaaaagatagtaatataaaaatccagtattaagaaactatagtaatagtatgtttttcatatgatc 217253  T
Q  177 caatgattagaaaagacttt 196  Q
    ||||||||| |||| |||||    
T  217254 caatgattaaaaaacacttt 217273  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 693714 - 693833
Alignment:
Q  77 gtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatc 176  Q
    ||||||||||||| ||||||||| | |||||||||  |||||||||| ||||||||| ||| || ||| ||||| |||| ||| |||| ||  |||||||    
T  693714 gtgggtgagagagacatgtgagatagagtggttggaaaagatagtaatataaaaatccagtattaagaaactatagtaatagtatgtttttcatatgatc 693813  T
Q  177 caatgattagaaaagacttt 196  Q
    ||||||||| |||| |||||    
T  693814 caatgattaaaaaacacttt 693833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 697923 - 698042
Alignment:
Q  77 gtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatc 176  Q
    ||||||||||||| ||||||||| | |||||||||  |||||||||| ||||||||| ||| || ||| ||||| |||| ||| |||| ||  |||||||    
T  697923 gtgggtgagagagacatgtgagatagagtggttggaaaagatagtaatataaaaatccagtattaagaaactatagtaatagtatgtttttcatatgatc 698022  T
Q  177 caatgattagaaaagacttt 196  Q
    ||||||||| |||| |||||    
T  698023 caatgattaaaaaacacttt 698042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 730777 - 730896
Alignment:
Q  77 gtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatc 176  Q
    ||||||||||||| ||||||||| | |||||||||  |||||||||| ||||||||| ||| || ||| ||||| |||| ||| |||| ||  |||||||    
T  730777 gtgggtgagagagacatgtgagatagagtggttggaaaagatagtaatataaaaatccagtattaagaaactatagtaatagtatgtttttcatatgatc 730876  T
Q  177 caatgattagaaaagacttt 196  Q
    ||||||||| |||| |||||    
T  730877 caatgattaaaaaacacttt 730896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 854672 - 854791
Alignment:
Q  77 gtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatc 176  Q
    ||||||||||||| ||||||||| | |||||||||  |||||||||| ||||||||| ||| || ||| ||||| |||| ||| |||| ||  |||||||    
T  854672 gtgggtgagagagacatgtgagatagagtggttggaaaagatagtaatataaaaatccagtattaagaaactatagtaatagtatgtttttcatatgatc 854771  T
Q  177 caatgattagaaaagacttt 196  Q
    ||||||||| |||| |||||    
T  854772 caatgattaaaaaacacttt 854791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 26492176 - 26492111
Alignment:
Q  96 gagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgt 161  Q
    |||||| | |||||||| | ||| || | ||||||||||||||||||||||||||||||| |||||    
T  26492176 gagagagaatggttgggaatgatggtgacataaaaatctagtgttgagagactattgtaatagtgt 26492111  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 4627079 - 4627034
Alignment:
Q  96 gagagaaagtggttggggaagatagtaagataaaaatctagtgttg 141  Q
    |||||| | ||||||||||||||||| ||||| |||||||||||||    
T  4627079 gagagagaatggttggggaagatagtgagatacaaatctagtgttg 4627034  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 17227139 - 17227006
Alignment:
Q  67 aagatgaatagtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttat 166  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |    
T  17227139 aagatgaatagtgggtgagag--gcatgtgagagaaagtggttggggaagataggaagataaaaatctagtgttgagggactattgtaatagtgtgttct 17227042  T
Q  167 ttgtatgatccaatgattagaaaagactttcccatg 202  Q
    ||||||||| || || |||||||||| |||||||||    
T  17227041 ttgtatgattcattggttagaaaagattttcccatg 17227006  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 4486528 - 4486611
Alignment:
Q  96 gagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaa 179  Q
    |||||| | |||||||| |||||  | |||||||||| ||||||| |||||||||||||| |||||| | ||| | ||||||||    
T  4486528 gagagagaatggttgggaaagatgctgagataaaaatttagtgtttagagactattgtaatagtgtgctttttatgtgatccaa 4486611  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 13655581 - 13655669
Alignment:
Q  113 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaatgattagaaaagactttcccat 201  Q
    |||||||||||||||| |||  ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||    
T  13655581 gaagatagtaagataagaattcagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttcccat 13655669  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 4909575 - 4909658
Alignment:
Q  96 gagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatccaa 179  Q
    |||||| | |||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| | ||| | ||||||||    
T  4909575 gagagagaatggttgggaaagatggtgagataaaaatctagtgttgagagactattgtaatagtgtgctctttatgtgatccaa 4909658  T

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Target: scaffold1037 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 2192 - 2068
Alignment:
Q  77 gtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatc 176  Q
    ||||||||||||| ||||||||| | |||||||||  |||||||||| ||||||||| |||||| ||||||||| |||| |||||||| ||  ||||||     
T  2192 gtgggtgagagagacatgtgagatagagtggttggaaaagatagtaatataaaaatccagtgttaagagactatagtaatagtgtgttcttcatatgatt 2093  T
Q  177 caatgattagaaaagactttcccat 201  Q
    ||||||||| |||| ||||| ||||    
T  2092 caatgattaaaaaacacttttccat 2068  T

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Target: scaffold1031 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 2310 - 2186
Alignment:
Q  77 gtgggtgagagaggcatgtgagagaaagtggttggggaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttatttgtatgatc 176  Q
    ||||||||||||| ||||||||| | |||||||||  |||||||||| ||||||||| |||||| ||||||||| |||| |||||||| ||  ||||||     
T  2310 gtgggtgagagagacatgtgagatagagtggttggaaaagatagtaatataaaaatccagtgttaagagactatagtaatagtgtgttcttcatatgatt 2211  T
Q  177 caatgattagaaaagactttcccat 201  Q
    ||||||||| |||| ||||| ||||    
T  2210 caatgattaaaaaacacttttccat 2186  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 19737901 - 19737949
Alignment:
Q  135 agtgttgagagactattgtaacagtgtgttatttgtatgatccaatgat 183  Q
    ||||||||||||||||||||| ||||||||  || ||||||| ||||||    
T  19737901 agtgttgagagactattgtaatagtgtgtttcttatatgatctaatgat 19737949  T

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