View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15301_low_7 (Length: 244)
Name: NF15301_low_7
Description: NF15301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15301_low_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 52808215 - 52807966
Alignment:
| Q |
1 |
ctgtaacttaaactttgtttgtaactggtagtttagtttcttaactaaccgatagagttgtttattagtacagccaaacatagttaataaggtgattaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52808215 |
ctgtaacttaaactttgtttgtaactggtagtttagtttcttaactaaccgatagagttgtttattagtacagccaaacatagttaataaggtgattaat |
52808116 |
T |
|
| Q |
101 |
taccaattcgcaccacagcaaaataccataattgccaggtttcatccataaaccaatcatgcaagtatttgtttgtcttatgctctaacaccaatcaaac |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52808115 |
taccaattcgcaccacaacaaaataccataattgccaggtttcatccatagaccaatcatgcaagtatttgtttgtcttatgctctaacaccaatcaaac |
52808016 |
T |
|
| Q |
201 |
atccttctcacattatta------ttatcatctttttgttacattttgca |
244 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
52808015 |
atccttctcacattattattattattattatctttttgttacattttgca |
52807966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University