View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_10 (Length: 627)
Name: NF15302_high_10
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 85 - 586
Target Start/End: Complemental strand, 29719965 - 29719464
Alignment:
| Q |
85 |
accatatacatgagaaaaattaatagtattagtgcttccaaaactcctaaatatgaatttgagtttacattaaataatctcattatttttatatttgcat |
184 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29719965 |
accatatacatgagaaaagttaatagtattagtgcttccaaaactcctaaatatgaatttgagtttacattaaataatctcattatttttatatttgcat |
29719866 |
T |
|
| Q |
185 |
ggtgaataaaattgttctgttcttttccttcaatagtgtgaacagaaagaaagggatttgatgtacatttgggtggatttcttgaaaggcgatgaaatga |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29719865 |
ggtgaataaaattgttctgttcttttccttcaatagtgtgaacagaaagaaagggatttgatgtacatttgggtggatttcttgaaaggcgatgaaatga |
29719766 |
T |
|
| Q |
285 |
acttttgggaaggtcaatgggatgcacatggtagctgcttctatgaaactttcaaccaggaaagcatattttcaattggccatagatcttcatcattttg |
384 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29719765 |
acttttgggaaggccaatgggatgcacatggtagctgcttctatgaaactttcaaccaggaaagcatattttcaattggccatagatcttcatcattttg |
29719666 |
T |
|
| Q |
385 |
aacttgatcttgttaaagcttttgagagtcaagatacatccccaatctatggggtagactttgatataaaggatcttagatcacaacttcaagctatata |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29719665 |
aacttgatcttgttaaagcttttgagagtcaagatacatccccaatctatggggtagactttgatataaaggatcttagatcacaacttcaagctatata |
29719566 |
T |
|
| Q |
485 |
cggtgttcggcctcaatttaagtgttccactccacacaatagcgtgataaaggtccaatgcttctcttatttccaaagagcacattggagataaccacat |
584 |
Q |
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| T |
29719565 |
cggtgttcggcctcaatttaagttttccactccacacaatagcgtgataaaggtccaacgcttctcttatttccaaagagcacattggagataaccacat |
29719466 |
T |
|
| Q |
585 |
ag |
586 |
Q |
| |
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|| |
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| T |
29719465 |
ag |
29719464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 107 - 379
Target Start/End: Original strand, 24537587 - 24537858
Alignment:
| Q |
107 |
atagtattagtgcttccaaaactcctaaatatgaatttgagtttacattaaataatctcattatttttatatttgcatggtgaataaaattgttctgttc |
206 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||| |
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| T |
24537587 |
atagtattagtgcttccaaacctcctaaatatgaatttgagtttacattaaataatctcattgttgttttatttatatggtgaataaaattgttctgttc |
24537686 |
T |
|
| Q |
207 |
ttttccttcaatagtgtgaacagaaagaaagggatttgatgtacatttgggtggatttcttgaaaggcgatga-aatgaacttttgggaaggtcaatggg |
305 |
Q |
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|||| |||||||||||| || |||||||||||| |||| | |||||| | |||||| | | || || || |||||| |||||| ||| ||||||| |
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| T |
24537687 |
tttttcttcaatagtgtaaaatgaaagaaagggagttgacgcgtatttggatcgatttccagcatggtgacgataatgaa-ttttggaaagcccaatggg |
24537785 |
T |
|
| Q |
306 |
atgcacatggtagctgcttctatgaaactttcaaccaggaaagcatattttcaattggccatagatcttcatca |
379 |
Q |
| |
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|| |||||||| ||||| || |||| |||||| || | | |||||||||||| |||||||||||||| |||| |
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|
| T |
24537786 |
atatgcatggtagttgcttttacgaaaatttcaatcaag-aggcatattttcaaatggccatagatctttatca |
24537858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 29722979 - 29722903
Alignment:
| Q |
15 |
ataatacttcaacacattaataatagtgaagttataatttatcgatatttgtccgaggttaatcctttaaaccatat |
91 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29722979 |
ataatacttcgacacattaataatagtgaagttatagtttatcgatatttgtccgaggttaatcctttaaaccatat |
29722903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 24537429 - 24537509
Alignment:
| Q |
19 |
tacttcaacacattaataatagtgaagttataatttatcgatatttgtccgaggttaatcctttaaaccatatacatgaga |
99 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| | ||| || |||||||||| ||||||||||||| |||||| |
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| T |
24537429 |
tacttcgacacattaataatagtgaagttataatttaacaatactttctggaggttaatcttttaaaccatatatatgaga |
24537509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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