View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_high_105 (Length: 210)

Name: NF15302_high_105
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_high_105
NF15302_high_105
[»] chr4 (5 HSPs)
chr4 (15-202)||(22200045-22200228)
chr4 (50-143)||(22185053-22185146)
chr4 (48-136)||(22166898-22166988)
chr4 (89-176)||(20941909-20941994)
chr4 (128-179)||(22166830-22166879)
[»] chr8 (1 HSPs)
chr8 (146-190)||(26884853-26884897)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 22200228 - 22200045
Alignment:
Q  15 agtttcttcctttgcatgttataaatnnnnnnngtttgatccattttataactaaaaatttaatggttaactagcttcaattaaattttatttaacattt 114  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22200228 agtttcttcctttgcatgttataaa--aaaaaagtttgatccattttataactaaaaatttaatggttaactagcttcaattaaattttatttaacattt 22200131  T
Q  115 aggagttccacgtagtcatttataaaattgaaaaattaatattaaatatttctaatcaatatatcatatttatcccttcatctcactc 202  Q
    ||||||||| ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||    
T  22200130 aggagttcctcgtagtcatttataaaattg--aaattaatattaaacatttctaatcaatatatcatatttatccctttatatcactc 22200045  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 22185146 - 22185053
Alignment:
Q  50 ttgatccattttataactaaaaatttaatggttaactagcttcaattaaattttatttaacatttaggagttccacgtagtcatttataaaatt 143  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||| |||| || | ||||||||||||||||    
T  22185146 ttgatcccttttataactaaaaatttaatgtttaaatagcttcaactaaattttatttagcatttagtagttacaagaagtcatttataaaatt 22185053  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 22166988 - 22166898
Alignment:
Q  48 gtttgatccattttataactaaaaatttaatggtt--aactagcttcaattaaattttatttaacatttaggagttccacgtagtcattta 136  Q
    ||||||||| |||||||||||||||||||||| |   || ||||||||||||||||||||||| |||||||||||| || | |||||||||    
T  22166988 gtttgatcccttttataactaaaaatttaatgttctgaaatagcttcaattaaattttatttagcatttaggagttacaagaagtcattta 22166898  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 20941994 - 20941909
Alignment:
Q  89 cttcaattaaattttatttaacatttaggagttccacgtagtcatttataaaattgaaaaattaatattaaatatttctaatcaatat 176  Q
    |||||||||||| || ||||||| ||| ||||| || |||| ||||||||||||||  |||||||| ||| || | ||||||||||||    
T  20941994 cttcaattaaatattttttaacacttaagagttacaggtagccatttataaaattg--aaattaatgttagatgtctctaatcaatat 20941909  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 22166879 - 22166830
Alignment:
Q  128 agtcatttataaaattgaaaaattaatattaaatatttctaatcaatatatc 179  Q
    ||||||||||||||||||||  |||||||||||| ||| |||| ||||||||    
T  22166879 agtcatttataaaattgaaa--ttaatattaaatgtttttaattaatatatc 22166830  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 26884897 - 26884853
Alignment:
Q  146 aaaattaatattaaatatttctaatcaatatatcatatttatccc 190  Q
    ||||||||||| |||||| |||||||||||| |||| ||||||||    
T  26884897 aaaattaatataaaatatctctaatcaatatgtcatttttatccc 26884853  T

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