View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_high_108 (Length: 202)

Name: NF15302_high_108
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_high_108
NF15302_high_108
[»] chr8 (3 HSPs)
chr8 (89-175)||(8049954-8050041)
chr8 (11-69)||(8049862-8049920)
chr8 (94-158)||(8020469-8020534)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 8049954 - 8050041
Alignment:
Q  89 aaatattttatacgaatc-tcctttatttaatttgtaaatgacataaataacacataagaaatagggcacccagtagattaagtttta 175  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8049954 aaatattttataagaatcctcctttatttaatttgtaaatgacataaataacacataagaaatagggcacccaggagattaagtttta 8050041  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 8049862 - 8049920
Alignment:
Q  11 gtgagatgaaccacaacattattattgctactcaaagtcgttccagtaaaattgaaggt 69  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8049862 gtgagatcaaccacaacattattattgctactcaaagtcgttccagtaaaattgaaggt 8049920  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 8020469 - 8020534
Alignment:
Q  94 ttttatacgaatc-tcctttatttaatttgtaaatgacataaataacacataagaaatagggcacc 158  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8020469 ttttataagaatcatcctttatttaatttgtaaatgacataaataacacataagatatagggcacc 8020534  T

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