View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_11 (Length: 619)
Name: NF15302_high_11
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_11 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 9e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 444 - 608
Target Start/End: Original strand, 39929111 - 39929275
Alignment:
| Q |
444 |
ttccgaatccaatactgatgtcttttaagtctcttcactcgtttcttgtgctttattaatcttcttcatgggtttttgaagcacgtgagagaagtacata |
543 |
Q |
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| T |
39929111 |
ttccgaatccaatactgatgtcttttaagtctcttcactcgtttcttgtgctttattaaccttcttcatgggtttttgaagcacgtgagagaagtacata |
39929210 |
T |
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| Q |
544 |
ttgctcttgttgccagccacttatacatcttttcccctattggctgtttgatgaagaattatcta |
608 |
Q |
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| T |
39929211 |
ttgctcttgttgccagccacttatacatcttttcccctattggttgtttgatgaagagttatcta |
39929275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 39928717 - 39929010
Alignment:
| Q |
19 |
atatgttgctgagagtggcgtgacgtgacttgaagctgcatggagaccatttccttttcttgctctcgtgccggatgtcatctcgacatatcagtcattt |
118 |
Q |
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| T |
39928717 |
atatgttgctgagagtggcgtgacgtgacttgaagc----cggagaccatttccttttcttgctctcgtgccggatgtcatctcgacatatcagtcgttt |
39928812 |
T |
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| Q |
119 |
aaaaatagaaacaattgatatattttatatatnnnnnnnnntgttttataaagttttaatctgttgttgtattaatcttttaagacatttgttaacattt |
218 |
Q |
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| T |
39928813 |
aaaaatagaaacaattgatatattttatatata----------taaaaaaaaagtttaatc---tattgtattaatcttttaagacatttgttaatattt |
39928899 |
T |
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| Q |
219 |
caattaagataatttacttataaatatattgtctg-ctgtcttatcaacacataaaagatgctctcaatgaaagttaattcaggatgggaatcaactaat |
317 |
Q |
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| T |
39928900 |
cagttaaaataatttacttataaatatattgtccgtctgtcttatcaacaccgaaaagatgc-----ctgaaagttcattcaggatgggaatcaactaat |
39928994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 39929025 - 39929063
Alignment:
| Q |
352 |
aatacaactaaagattatgtcattttgatgttttaaagg |
390 |
Q |
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| T |
39929025 |
aatacaactaaagattttgtcattttgatgttttaaagg |
39929063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 51489 - 51421
Alignment:
| Q |
42 |
cgtgacttgaagctgcatggagaccatttccttttcttgctctcgtgccggatgtcatctcgacatatc |
110 |
Q |
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| T |
51489 |
cgtgacttgaagctgcacggagaccatttccttttcttgctctcgtgctggatgtcatctcggcatatc |
51421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 24994805 - 24994737
Alignment:
| Q |
42 |
cgtgacttgaagctgcatggagaccatttccttttcttgctctcgtgccggatgtcatctcgacatatc |
110 |
Q |
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| T |
24994805 |
cgtgacttgaagctgcacggagaccatttccttttcttgctctcgtgctggatgtcatctcggcatatc |
24994737 |
T |
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