View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_13 (Length: 586)
Name: NF15302_high_13
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 13 - 570
Target Start/End: Original strand, 42788871 - 42789428
Alignment:
| Q |
13 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788871 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
42788970 |
T |
|
| Q |
113 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttccct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788971 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttccct |
42789070 |
T |
|
| Q |
213 |
attaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaactcgacattctt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42789071 |
attaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaactcgacattctt |
42789170 |
T |
|
| Q |
313 |
cgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaacaatgtgaactc |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42789171 |
cgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatgtgaactc |
42789270 |
T |
|
| Q |
413 |
tctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataag |
512 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789271 |
tctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataag |
42789370 |
T |
|
| Q |
513 |
gtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaact |
570 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42789371 |
gtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaact |
42789428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 13 - 570
Target Start/End: Original strand, 42798409 - 42798966
Alignment:
| Q |
13 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798409 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
42798508 |
T |
|
| Q |
113 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttccct |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798509 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttccct |
42798608 |
T |
|
| Q |
213 |
attaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaactcgacattctt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42798609 |
attaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaactcgacattctt |
42798708 |
T |
|
| Q |
313 |
cgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaacaatgtgaactc |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42798709 |
cgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatgtgaactc |
42798808 |
T |
|
| Q |
413 |
tctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataag |
512 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798809 |
tctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataag |
42798908 |
T |
|
| Q |
513 |
gtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaact |
570 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42798909 |
gtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaact |
42798966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 102 - 565
Target Start/End: Original strand, 34566633 - 34567096
Alignment:
| Q |
102 |
tggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttc |
201 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| | |
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|
| T |
34566633 |
tggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatttcatatcttttcctt |
34566732 |
T |
|
| Q |
202 |
aatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaac |
301 |
Q |
| |
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|||||||| ||||| | || || || || ||||| || ||| ||||| | ||| || |||| || ||||||||||||||||| |||||||||| |
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| T |
34566733 |
aatctttctctattgaccttgatgtaattatcagtgaaactttcatctgacaacattgatgctaaaagatgttgtgtttgtgaagatattaaggtaaaac |
34566832 |
T |
|
| Q |
302 |
tcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaac |
401 |
Q |
| |
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||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
34566833 |
tcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagactataaac |
34566932 |
T |
|
| Q |
402 |
aatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcg |
501 |
Q |
| |
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||||||| ||| || || ||||||||| |||||| ||| |||||||| |||||||||| || ||| ||| || ||||| || |||||||||||| |
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| T |
34566933 |
aatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtagatttcg |
34567032 |
T |
|
| Q |
502 |
tctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtt |
565 |
Q |
| |
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||||||| |||||| |||||||| ||||| |||| ||||| || || ||||||||||||| |
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|
| T |
34567033 |
tctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgtt |
34567096 |
T |
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