View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_high_18 (Length: 545)

Name: NF15302_high_18
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_high_18
NF15302_high_18
[»] chr4 (17 HSPs)
chr4 (130-529)||(7875473-7875872)
chr4 (130-492)||(7871735-7872097)
chr4 (273-529)||(7890385-7890641)
chr4 (198-344)||(10034154-10034300)
chr4 (159-368)||(21224014-21224222)
chr4 (159-365)||(21225569-21225775)
chr4 (155-365)||(21232133-21232345)
chr4 (155-206)||(7890267-7890318)
chr4 (159-209)||(6547320-6547370)
chr4 (155-216)||(6589450-6589511)
chr4 (155-216)||(6756958-6757019)
chr4 (428-463)||(4135483-4135518)
chr4 (428-463)||(4322804-4322839)
chr4 (428-463)||(4343207-4343242)
chr4 (166-216)||(6726426-6726476)
chr4 (155-216)||(6771699-6771760)
chr4 (155-216)||(6814267-6814328)
[»] chr7 (6 HSPs)
chr7 (427-489)||(34735195-34735257)
chr7 (158-216)||(36215321-36215379)
chr7 (428-489)||(18929226-18929287)
chr7 (428-463)||(34727439-34727474)
chr7 (169-214)||(34727174-34727219)
chr7 (428-489)||(34730597-34730658)
[»] chr6 (11 HSPs)
chr6 (168-217)||(5395557-5395606)
chr6 (169-217)||(5068514-5068562)
chr6 (169-217)||(5094555-5094603)
chr6 (168-216)||(5183391-5183439)
chr6 (169-217)||(5348889-5348937)
chr6 (158-217)||(5424267-5424326)
chr6 (169-214)||(5148399-5148444)
chr6 (169-218)||(5368973-5369022)
chr6 (169-217)||(5104312-5104360)
chr6 (169-217)||(5158941-5158989)
chr6 (169-217)||(5342208-5342256)
[»] chr5 (1 HSPs)
chr5 (169-214)||(8876318-8876363)


Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 130 - 529
Target Start/End: Original strand, 7875473 - 7875872
Alignment:
Q  130 agtaaatccaaaatattcaacattgattacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaa 229  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7875473 agtaaattcaaaatattcaacattgattacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaa 7875572  T
Q  230 tcatcaaagtttgttcacaactttccaattatgatatcgttgggaatggttttgagtttcttcagtgcattcttccactctgctacagatctatccagca 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7875573 tcatcaaagtttgttcacaactttccaattatgatatcgttgggaatggttttgagtttcttcagtgcattcttccactctgctacagatttatccagca 7875672  T
Q  330 aaaaagacctaatgacttcaagagccagcggcaatcccccacaatactctacagaatctttacaaagatcggcgtaactttccgttggacttggagtttt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7875673 aaaaagacctaatgacttcaagagccagcggcaatcccccacagtactctacataatctttacaaagatcggcgtaactttccgttggacttggagtttt 7875772  T
Q  430 gaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttatca 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7875773 gaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttatca 7875872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 130 - 492
Target Start/End: Original strand, 7871735 - 7872097
Alignment:
Q  130 agtaaatccaaaatattcaacattgattacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaa 229  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7871735 agtaaatccaaaatattcaacattgattacatcatctatgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaa 7871834  T
Q  230 tcatcaaagtttgttcacaactttccaattatgatatcgttgggaatggttttgagtttcttcagtgcattcttccactctgctacagatctatccagca 329  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7871835 tcatcaaagtttgttcacagctttccaattatgatatcgttgggaatggttttgagtttcttcagtgcattcttccactctgctacagatctatccagca 7871934  T
Q  330 aaaaagacctaatgacttcaagagccagcggcaatcccccacaatactctacagaatctttacaaagatcggcgtaactttccgttggacttggagtttt 429  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7871935 aaaaagacctaatgacttcaagagccagcgacaatcccccacagtactctacataatctttacaaagatcggcgtaactttccgttggacttggagtttt 7872034  T
Q  430 gaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatat 492  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  7872035 gaatgcatgccaaccaagaagctcacgagattcagtaatgtccatatatttcattctatatat 7872097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 273 - 529
Target Start/End: Original strand, 7890385 - 7890641
Alignment:
Q  273 gaatggttttgagtttcttcagtgcattcttccactctgctacagatctatccagcaaaaaagacctaatgacttcaagagccagcggcaatcccccaca 372  Q
    |||||||||||| |||||  |||||| |||||||||||  ||||||||| || | |||| |||||| || || ||||||||| | |||||| ||||||||    
T  7890385 gaatggttttgaatttctggagtgcaatcttccactcttgtacagatctgtcaaacaaataagacccaaggatttcaagagctaccggcaaccccccaca 7890484  T
Q  373 atactctacagaatctttacaaagatcggcgtaactttccgttggacttggagttttgaatgcatgccaactaagaagctcaagagattcagtaatgtcc 472  Q
     ||||| |||  |||| ||||||| || |||||||||||  | |||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||    
T  7890485 gtactcaacaacatctctacaaaggtcagcgtaactttctttaggacttggagttctgaatgcatgccaactaaaaagcttaagagattcagtattgtcc 7890584  T
Q  473 atatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttatca 529  Q
    ||||||||||||||||| | | | |||| || |||  ||| ||||||||||||||||    
T  7890585 atatatttcattctatacacatgatcaagttgaaggttacgaagtatatgtttatca 7890641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 198 - 344
Target Start/End: Complemental strand, 10034300 - 10034154
Alignment:
Q  198 caaggaatatttctttctcattaccatctaaatcatcaaagtttgttcacaactttccaattatgatatcgttgggaatggttttgagtttcttcagtgc 297  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| || |||||  ||||||||||||||||||||||||||||||||||  |||||    
T  10034300 caaggaatatttctttctcattgtcatctaaatcatcaaagtttgttctcagctttcgcattatgatatcgttgggaatggttttgagtttctctagtgc 10034201  T
Q  298 attcttccactctgctacagatctatccagcaaaaaagacctaatga 344  Q
    | ||||||||||||||||||||||| | ||||||||||||| |||||    
T  10034200 actcttccactctgctacagatctacctagcaaaaaagacccaatga 10034154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 159 - 368
Target Start/End: Complemental strand, 21224222 - 21224014
Alignment:
Q  159 catcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaatcatcaaagtttgttcacaactttccaat 258  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||| | | |||||||| |||||||||||||||||| | |||||  | || |   ||    
T  21224222 catcatctttgtccatcccaataaataaagtagctacatcaaggaatgtgtttttctcataaccatctaaatcatcaaattatgttcttagctctttcat 21224123  T
Q  259 tatgatatcgttgggaatggttttgagtttcttcagtgcattcttccactctgctacagatctatccagcaaaaaagacctaatgacttcaagagccagc 358  Q
    ||| | ||| | ||||||| |||||||||||| | || ||  ||||||| | ||||||||| |||| | |||||||  ||| || ||||||||||| ||     
T  21224122 tatcacatcatggggaatgattttgagtttctccggtacaaacttccacaccgctacagatttatcaaacaaaaaaatcct-ataacttcaagagctagg 21224024  T
Q  359 ggcaatcccc 368  Q
    ||||||||||    
T  21224023 ggcaatcccc 21224014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 365
Target Start/End: Complemental strand, 21225775 - 21225569
Alignment:
Q  159 catcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaatcatcaaagtttgttcacaactttccaat 258  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||| | | |||||||| ||||||||||| |||||| | |||||  | || |   ||    
T  21225775 catcatctttctccatcccaataaataaagtagctacatcaaggaatgtgtttttctcataaccatctaaattatcaaattatgttctgagctctttcat 21225676  T
Q  259 tatgatatcgttgggaatggttttgagtttcttcagtgcattcttccactctgctacagatctatccagcaaaaaagacctaatgacttcaagagccagc 358  Q
    ||| | ||| | ||||||| |||||||||||| | || ||  ||||||| | |||||| || |||| | ||||||||| |  || ||||||||||| |||    
T  21225675 tatcacatcatggggaatgattttgagtttctcccgtacaaacttccacaccgctacaaatttatcaaacaaaaaagatcctataacttcaagagctagc 21225576  T
Q  359 ggcaatc 365  Q
    |||||||    
T  21225575 ggcaatc 21225569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 155 - 365
Target Start/End: Complemental strand, 21232345 - 21232133
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctcattaccatctaaatcatcaaagtttgttcacaactttc 254  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||||||| | | |||||||| ||||||||||| |||||| | |||||  | || |     
T  21232345 attacatcatctttgtccatcctaataaataaagtagctacatcaaggaatgtgtttttctcataaccatctaaattatcaaattatgttcttagctctt 21232246  T
Q  255 caattatgatatc--gttgggaatggttttgagtttcttcagtgcattcttccactctgctacagatctatccagcaaaaaagacctaatgacttcaaga 352  Q
      ||||| | |||   | ||||||| |||||||||||| |||| ||  ||||||| | |||||||||  ||| | ||||||||| |  || |||||||||    
T  21232245 tcattatcacatcatatggggaatgattttgagtttctccagtacaaacttccacaccgctacagattcatcaaacaaaaaagatcctataacttcaaga 21232146  T
Q  353 gccagcggcaatc 365  Q
    || ||||||||||    
T  21232145 gctagcggcaatc 21232133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 7890267 - 7890318
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaata 206  Q
    |||||||||||||||| |||||||||||||||| ||||||| | ||||||||    
T  7890267 attacatcatctttgtgcatcccaataaataaagtagctattttaaggaata 7890318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 6547320 - 6547370
Alignment:
Q  159 catcatctttgtccatcccaataaataaattagctatatcaaggaatattt 209  Q
    |||||| |||||||||||||||||| |||  ||||||||||||||||||||    
T  6547320 catcatttttgtccatcccaataaagaaacaagctatatcaaggaatattt 6547370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 6589450 - 6589511
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||| | |||||||||||||||||| |||  ||| |||||||||||||||| ||||||    
T  6589450 attacatcctttttgtccatcccaataaagaaacaagcaatatcaaggaatatttgtttctc 6589511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 6757019 - 6756958
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||||| | ||||| |||||||||| |||  |||||||||||||||||||| ||||||    
T  6757019 attacatcatttctgtccttcccaataaagaaacaagctatatcaaggaatatttgtttctc 6756958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 463
Target Start/End: Original strand, 4135483 - 4135518
Alignment:
Q  428 ttgaatgcatgccaactaagaagctcaagagattca 463  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4135483 ttgaatgcatgccaactaaaaagctcaagagattca 4135518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 463
Target Start/End: Original strand, 4322804 - 4322839
Alignment:
Q  428 ttgaatgcatgccaactaagaagctcaagagattca 463  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4322804 ttgaatgcatgccaactaaaaagctcaagagattca 4322839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 463
Target Start/End: Complemental strand, 4343242 - 4343207
Alignment:
Q  428 ttgaatgcatgccaactaagaagctcaagagattca 463  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4343242 ttgaatgcatgccaactaaaaagctcaagagattca 4343207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 6726476 - 6726426
Alignment:
Q  166 tttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||||||||||||| |||  |||||||||||| ||||||| ||||||    
T  6726476 tttgtccatcccaataaagaaacaagctatatcaagaaatatttgtttctc 6726426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 6771760 - 6771699
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||| | |||||| | ||||||||| |||  |||||||||||||||||||| ||||||    
T  6771760 attacatcctttttgtctaccccaataaagaaacaagctatatcaaggaatatttgtttctc 6771699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 6814328 - 6814267
Alignment:
Q  155 attacatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||||| |  |||| |||||||||| |||  |||||||||||||||||||| ||||||    
T  6814328 attacatcatttcggtccctcccaataaagaaacaagctatatcaaggaatatttgtttctc 6814267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 489
Target Start/End: Original strand, 34735195 - 34735257
Alignment:
Q  427 tttgaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctata 489  Q
    |||||||||||||||||||| |||||||||||||||| |  ||||||| | ||||||||||||    
T  34735195 tttgaatgcatgccaactaaaaagctcaagagattcattgctgtccatttctttcattctata 34735257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 36215321 - 36215379
Alignment:
Q  158 acatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    ||||||| | |||||||||||||||| |||  |||||| ||||||||||||||||||||    
T  36215321 acatcatttctgtccatcccaataaagaaacaagctatgtcaaggaatatttctttctc 36215379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 489
Target Start/End: Complemental strand, 18929287 - 18929226
Alignment:
Q  428 ttgaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctata 489  Q
    ||||||||||||||||||| |||||||||||||||| |   |||||| | ||||||||||||    
T  18929287 ttgaatgcatgccaactaaaaagctcaagagattcattgtcgtccatttctttcattctata 18929226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 463
Target Start/End: Original strand, 34727439 - 34727474
Alignment:
Q  428 ttgaatgcatgccaactaagaagctcaagagattca 463  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34727439 ttgaatgcatgccaactaaaaagctcaagagattca 34727474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 34727174 - 34727219
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttc 214  Q
    ||||||||||||||| |||  ||| |||||||||||||||||||||    
T  34727174 gtccatcccaataaagaaaaaagcaatatcaaggaatatttctttc 34727219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 489
Target Start/End: Original strand, 34730597 - 34730658
Alignment:
Q  428 ttgaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctata 489  Q
    |||||| |||||||||| | |||||||||||||||| |  ||||||| | ||||||||||||    
T  34730597 ttgaatacatgccaactgaaaagctcaagagattcattgctgtccatttctttcattctata 34730658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 5395606 - 5395557
Alignment:
Q  168 tgtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    |||||||||||||||| |||  |||||| |||||||||||||||||||||    
T  5395606 tgtccatcccaataaaaaaacaagctatgtcaaggaatatttctttctca 5395557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 5068514 - 5068562
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  |||||| |||||||||||||||||||||    
T  5068514 gtccatcccaataaagaaacaagctatgtcaaggaatatttctttctca 5068562  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 5094603 - 5094555
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  ||||| ||||||||||||||||||||||    
T  5094603 gtccatcccaataaagaaacaagctacatcaaggaatatttctttctca 5094555  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 5183391 - 5183439
Alignment:
Q  168 tgtccatcccaataaataaattagctatatcaaggaatatttctttctc 216  Q
    |||||||||||||||| |||  |||||| ||||||||||||||||||||    
T  5183391 tgtccatcccaataaagaaacaagctatgtcaaggaatatttctttctc 5183439  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 5348937 - 5348889
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  |||||| |||||||||||||||||||||    
T  5348937 gtccatcccaataaagaaacaagctatgtcaaggaatatttctttctca 5348889  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 5424326 - 5424267
Alignment:
Q  158 acatcatctttgtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||| | ||||||| |||||||| |||  |||||| |||||||||||||||||||||    
T  5424326 acatcatttctgtccattccaataaagaaacaagctatgtcaaggaatatttctttctca 5424267  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 5148399 - 5148444
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttc 214  Q
    ||||||||||||||| |||  |||||| ||||||||||||||||||    
T  5148399 gtccatcccaataaagaaacaagctatgtcaaggaatatttctttc 5148444  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 5369022 - 5368973
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctcat 218  Q
    |||| |||||||||| |||  ||||| |||||||||||||||||||||||    
T  5369022 gtccttcccaataaagaaacaagctacatcaaggaatatttctttctcat 5368973  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 5104312 - 5104360
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  ||||| ||| ||||||||||||||||||    
T  5104312 gtccatcccaataaagaaacaagctacatcgaggaatatttctttctca 5104360  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 5158941 - 5158989
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||| ||||| |||  ||||| ||||||||||||||||||||||    
T  5158941 gtccatccctataaagaaacaagctacatcaaggaatatttctttctca 5158989  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 5342256 - 5342208
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttctca 217  Q
    ||||||||||||||| |||  |||||| ||||| |||||||||||||||    
T  5342256 gtccatcccaataaagaaacaagctatgtcaagaaatatttctttctca 5342208  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 8876363 - 8876318
Alignment:
Q  169 gtccatcccaataaataaattagctatatcaaggaatatttctttc 214  Q
    ||||||||||||||| |||  |||||| ||||||||||||||||||    
T  8876363 gtccatcccaataaagaaacaagctatgtcaaggaatatttctttc 8876318  T

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