View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_high_19 (Length: 541)
Name: NF15302_high_19
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 227 - 522
Target Start/End: Complemental strand, 18006322 - 18006026
Alignment:
| Q |
227 |
gatcaatgagaagtgaaaggataatcataaataatctaaatttgggggatt-gatgtcattaataaacttaaagtttcaattttttactacttggttttt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18006322 |
gatcaatgagaagtgaaaggataatcataaataatctaaatttgggggctttgatgtcattaataaacttaaagtttcaatattttactacttggttttt |
18006223 |
T |
|
| Q |
326 |
caaagatctaagcagaatattgaactcaagtttcaaggcagagatttgagtttgatgatccattttatatggttggtgccttagttttttgtgatccctt |
425 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18006222 |
caaagatctaaacagaatattgaactcaagtttcaaggcagagatttgagtttgatgatccattttatatggttggtgccttagttttttgtgatccctt |
18006123 |
T |
|
| Q |
426 |
tgtaagattttgagaattgtaggatagtattattttaatgtgacatttcataatttaacaaataatttgatgaaaaatcactataaggacaagaatg |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18006122 |
tgtaagattttgagaattgtaggatagtattattttaatgtgacatttcataatttaacaaataatttgatgaaaaatcactataaggacaagaatg |
18006026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 18006472 - 18006424
Alignment:
| Q |
69 |
gaggtaaaactgtttctgttaaccaattctagtatgaatgaaccagttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18006472 |
gaggtaaaactgtttctgttaaccaattcttgtatgaatgaaccagttc |
18006424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 18006525 - 18006496
Alignment:
| Q |
15 |
actaacttgacttcagatttgaaaaggttg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18006525 |
actaacttgacttcagatttgaaaaggttg |
18006496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University