View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_23 (Length: 518)
Name: NF15302_high_23
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 20428935 - 20428519
Alignment:
| Q |
20 |
tactgaaactaacgtgctcactcaggatgttgtacctt---tcatgggattgatccacacagcttcacggaattgggcgtactagcgccgatcatgaaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20428935 |
tactgaaactaacgtgctcactcaggatgttgtaccttatttcatgggattgatccacacggcttcacggaattgggcgtactagcgccgatcatgaaca |
20428836 |
T |
|
| Q |
117 |
tatgacattccttttttagtattaatttatttcttttcatggcttagaatttataaaacatagcattatttcttttgtgattttgttttgattttacttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
20428835 |
tatgacattccttttttagtattaatttatttcttttcatggcttagaatttataaaacatagtattattt-ttttgtgattttgttttgattttacttt |
20428737 |
T |
|
| Q |
217 |
gtctatttatgaatgtgttaatgaaagattaatgcattggaaaagaacactacaagttgaaaaagttgcttatttttataactcatttgggttggccaag |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
20428736 |
gtctatttatgaatgtgttaataaaagattaatgcattggaatagaacactacaagttgaaaaagttgcttatttttataacccatttgggttggtcaag |
20428637 |
T |
|
| Q |
317 |
tggctttaaattgagaccttaaattatactcctctcaaaagtcttaagtttgattatcgataacgttaatttcggtggacaaatttatctcctttggagg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20428636 |
tggctttaaattgagaccttaaattatactcctctcaaaagtcttaagtttgattatcgataatgttaatttcggtggacaaatttatctcctttggagg |
20428537 |
T |
|
| Q |
417 |
aaaaaatcacttattttt |
434 |
Q |
| |
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|||||||||||| ||||| |
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| T |
20428536 |
aaaaaatcactttttttt |
20428519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 388
Target Start/End: Complemental strand, 20433105 - 20432993
Alignment:
| Q |
276 |
aaaaagttgcttatttttataactcatttgggttggccaagtggctttaaattgagaccttaaattatactcctctcaaaagtcttaagtttgattatcg |
375 |
Q |
| |
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||||| |||||||||||||||| |||||||||||| | || |||| |||||||||||| |||| | || | | ||| |||||||||| |||| ||| |
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| T |
20433105 |
aaaaaattgcttatttttataatccatttgggttggtcggatgactttgaattgagaccttgaattgtgctttttttaaaggtcttaagttcgattttcg |
20433006 |
T |
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| Q |
376 |
ataacgttaattt |
388 |
Q |
| |
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||| |||||||| |
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| T |
20433005 |
atagtgttaattt |
20432993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 5321816 - 5321396
Alignment:
| Q |
20 |
tactgaaactaacgtgctcactcaggatgttgtacctt---tcatgggattgatccacacagcttcacggaattgggcgtactagcgccgatcatgaaca |
116 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5321816 |
tactaaaactaacgttctcactcaggatgttgtaccttatttcatgggattgatccacacggcttcacggaattgggcgtactagcgccgatcatgaaca |
5321717 |
T |
|
| Q |
117 |
tatgacattccttttttagtattaatttatttcttttcatggcttagaatttataaaacatagcattatttcttttgtgattttgttttgattttacttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
5321716 |
tatgacattccttttttagtattaatttatttcttttcatggcttagaatttataaaacatagtattattt-ttttgtgattttgttttgattttacttt |
5321618 |
T |
|
| Q |
217 |
gtctatttatgaatgtgttaatgaaagattaatgcattggaaaagaacactacaagttgaaaaagttgcttatttttataactcatttgggttggccaag |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
5321617 |
gtctatttatgaatgtgttaataaaagattaatgcattggaaaagaacactacaagttgaaaaagttgcttatttttataacccatttgggttgatcaag |
5321518 |
T |
|
| Q |
317 |
tggctttaaattgagaccttaaattatactcctctcaaaagtcttaagtttgattatcgataacgttaatttcggtggacaaatttatctcctttggagg |
416 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
5321517 |
tggctttaaattgagaccttaaattattctcctctcaaaagtcttaagtttgattatcgataatgttaattttggtggacaaatttatctcctttggagg |
5321418 |
T |
|
| Q |
417 |
aaaaaatcacttatttttatat |
438 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
5321417 |
aaaaaatcactaatttttatat |
5321396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 5329086 - 5329049
Alignment:
| Q |
233 |
gttaatgaaagattaatgcattggaaaagaacactaca |
270 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||| |
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| T |
5329086 |
gttattgaaagattaatacattggaaaagaacactaca |
5329049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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