View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_27 (Length: 486)
Name: NF15302_high_27
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 468
Target Start/End: Complemental strand, 22056999 - 22056547
Alignment:
| Q |
16 |
atataatctagtttatttgtgtagccaaatagagcctaaaagactccctagtgaacaatagattaattgaaaagaatgcaaatttgaagtaccatccaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22056999 |
atataatctagtttatttgtgtagccaaatagagcctaaaagactccttagtgaacaatagattaattgaaaagaatgcaaatttgaagtaccatccaaa |
22056900 |
T |
|
| Q |
116 |
tcaaacnnnnnnnatacaataaaaatgattttacaataaaaatgacacaaggattcatacacaagaaatcaagaaaccatagaaaatttcaaatgaaaag |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22056899 |
tcaaactttttttatacaataaaaatgattttacaataaaaatgacacaaggattcatacacaagaaatcaagaaaccatagaaaatttcaaatgaaaag |
22056800 |
T |
|
| Q |
216 |
caacaaaaaagtggcatggcgagatagacatagaaaaattaaaatgcaacttccaaatggaaaccattcatcaactccacatcattgctacagcaacaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22056799 |
caacaaaaaagtggcatggcgagatagacataaaaaaattaaaatgcaacttccaaatggaaaccattcatcaactccatatcattgctacagcaacaaa |
22056700 |
T |
|
| Q |
316 |
agacaccaacgttgttccaagaattccacacaatctcactgctccagatttaccttgatcctgatcattttgatcttgatcatcagcagaagaattctcc |
415 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22056699 |
agacatcaacgttgttccaagaattccacacaatctcactgctccggatttaccttgatcctgatcattttgatcttgatcatcagcagaagaattttcc |
22056600 |
T |
|
| Q |
416 |
ttattagcagctttaggagccttagcagcagcagcaagagttggagccaaagc |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22056599 |
ttattagcagctttaggagccttagcagcagcagcaagagttggagccaaagc |
22056547 |
T |
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